Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01029 ATGGCTTCGGAGGACGTCAAACGAAGCGAATCGGCTGTTTCTACGATCGTAAACCTGGCAGAGGAGGCGAAGCTTGCGAGAGGAGGCGTCAAAGCACCTAGTTATGCTCTGCTTAGCATCTGCAAATCTCTGGTTGCTGGTGGAGTCGCCGGTGGAGTGTCTCGAACTGCTGTTGCCCCTTTGGAGCGTTTGAAGATATTATTACAGGTCCAGAATCCTCATAGCATAAAATATAATGGGACGATACAAGGCTTGAAATATATTTGGAGAACTGAGGGTTTTCGAGGATTATTCAAAGGCAATGGCTTGAAATATATTTGGAGAACTGAGGGTTTTCGAGGATTATTCAAAGGCAATGGTACAAATTGTGCTCGTATAGTACCAAATTCAGCAGTAAAATTCTTCAGCTATGAGCAAGCTTCTCGTCGGTGGTCTGTCATAATGATAGTAAAATTCTTCAGCTATGAGCAAGCTTCTCGGGGAATACTGGCCTTTTACAGGGAGAAAACTGGTGACCAAGATGCACAACTCACTCCTCTTCTACGTCTTGGTGCTGGAGCTTGTGCTGGAATAATTGCCATGTCAGCAACTTACCCTATGGACATGGTGCGAGGCAGGCTAACTGTGCAGACAGATAAGTCTCCTTACCAGTACAGAGGAATATTCCATGCTCTTTCAACGGTGCTTCGGGAAGAAGGTCCAAGGGCTTTGTACAAGGGTTGGCTTCCTTCTGTCATTGGAGTTGTTCCTTACGTGGGCCTCAACTTTGCTGTGTATGAATCGCTTAAAGACTGGTTGATTAAAAGTAAACCATTTGGACTTGTTGAAGATTCAGAGCTCAGTGTGACAACACGTCTAGCATGTGGAGCTGCTGCTGGAACAGTCGGTCAAACTGTTGCTTATCCTCTTGATGTCATTCGTAGAAGAATGCAGATGGTGGGTTGGAATAATGCTGCTTCCGTAGTCACTGGTGATGGAAGAAGTAAGGCACCCCTCGAGTACACTGGCATGTTCGTTATGAAGGCTTCAGAGCATTGTACAAGGGTTTGGTGCATGGTTGATGCTTTTCGAAAAACAGTTCGTTATGAAGGCTTCAGAGCATTGTACAAGGGTTTGGTCCCCAACTCAGTTAAGGTTGTCCCATCAATTGCAATCGCATTTGTGTCGTACGAGATGGTGAAGGACTTACGATGA 1194 45.56 MASEDVKRSESAVSTIVNLAEEAKLARGGVKAPSYALLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASRRWSVIMIVKFFSYEQASRGILAFYREKTGDQDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTDKSPYQYRGIFHALSTVLREEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKPFGLVEDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNNAASVVTGDGRSKAPLEYTGMFVMKASEHCTRVWCMVDAFRKTVRYEGFRALYKGLVPNSVKVVPSIAIAFVSYEMVKDLR 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6931565 6937706 + CmaCh06G010290.1 Cma06g01029 296583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01029 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 396 IPR018108 -
Cma06g01029 397 PANTHER SOLUTE CARRIER FAMILY 25 102 145 - -
Cma06g01029 397 Gene3D Mitochondrial carrier domain 36 103 IPR023395 -
Cma06g01029 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 177 265 IPR018108 -
Cma06g01029 397 PANTHER BNAA09G39370D PROTEIN 149 396 - -
Cma06g01029 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 143 IPR018108 -
Cma06g01029 397 Gene3D Mitochondrial carrier domain 104 397 IPR023395 -
Cma06g01029 397 SUPERFAMILY Mitochondrial carrier 103 392 IPR023395 -
Cma06g01029 397 PANTHER SOLUTE CARRIER FAMILY 25 1 102 - -
Cma06g01029 397 PANTHER SOLUTE CARRIER FAMILY 25 149 396 - -
Cma06g01029 397 PANTHER BNAA09G39370D PROTEIN 1 102 - -
Cma06g01029 397 PANTHER BNAA09G39370D PROTEIN 102 145 - -
Cma06g01029 397 Pfam Mitochondrial carrier protein 103 142 IPR018108 -
Cma06g01029 397 Pfam Mitochondrial carrier protein 39 102 IPR018108 -
Cma06g01029 397 Pfam Mitochondrial carrier protein 177 269 IPR018108 -
Cma06g01029 397 Pfam Mitochondrial carrier protein 279 396 IPR018108 -
Cma06g01029 397 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Cma06g01029 397 PRINTS Mitochondrial carrier protein signature 238 256 IPR002067 GO:0055085
Cma06g01029 397 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Cma06g01029 397 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Cma06g01029 397 PRINTS Mitochondrial carrier protein signature 118 138 IPR002067 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01029 K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 - csv:101215644 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01029 Cma-Chr6:6931565 Cma10g00707 Cma-Chr10:3179779 1.36E-16 dispersed
Cma14g02077 Cma-Chr14:14402468 Cma06g01029 Cma-Chr6:6931565 1.03E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0839 Cone9ag0836 . . . . . . . . . . . . . . . Cma06g01029 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003572 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 2 1 2 2 4 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01029 Cma_Chr06 FPKM 8.913602 12.660617 7.985686 8.603809 5.810456 6.416306 6.113314 10.459044 10.392454 9.712311