Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01037 ATGGGCACTAGTGAAGAGGCCAAGGCTGTGAAGTCTGAAAAACCATCTTCACCAACGCAGGATCAGAACAATGGGTCAAATTCGGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCCTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGCTCCTGCTGCAAATCCTTTGAGCATTGAAGCACCTTCAAAGGTTTCTGGAAACAGTAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGACGGCCTGGCAATGTCTATCGGCAATAAACTGAAAGGTTTCGACGGCCTGGCAATGTCTATCGGCAATGTTAATACTGAGAGTGCTGACGGGCCCAGTGAGCACGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGCACACCTACCACTGGTAAAGATGCAAAAATTGAGACACAAGGAAGTCCAGTTACTCCTGCTGAAATGAACGAAAGCTCTAGCAAGTTATTGGGTATAATCAAAGCAGCTGATGCAACTGGAAAGCTTGGATCTGTGATTTCTCCTGGAATGTCTACAGCTCTGGAACTTAGGAATCCTTCTAGTATGAACACCATTTCAGGTCCAACGAGCTTCCCACCTTGTTCGGTATTGCCTTCTGAAGTCTGGCTTCAGAATGAAAAAGAACTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCGAGGTTAAGGAAGCAGGCTGAGACTGAAGAACTAGCTCATAAAGTCGATTCACTGACTGCGGAGAACGTCGCTATTAGATCTGAAATAAGTAGATTGTCGGAGAATTCCGAGAAACTTAAGCAAGAAAACGCTACATTGATGGAGAAGCTTAAAAGCGCTCAATCAGGTCGAACAGAAGCATTAGACATGAACGAAAAAAGGACAAAACATCTTGTAAGCACAGACATCAAAGGACCTGTGAACAAAAGCATCAACGAAGAGAGTAACATCTGCAAGAAGAAATCGAGTTCGGGAGCAAAGTTGCGTCAACTCTTGGACACGAATCCAAGGGCCGACTGCGTTGCCGCCAGCTAA 1299 45.88 MGTSEEAKAVKSEKPSSPTQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAPAANPLSIEAPSKVSGNSSQGLMKKLKGFDGLAMSIGNKLKGFDGLAMSIGNVNTESADGPSEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIETQGSPVTPAEMNESSSKLLGIIKAADATGKLGSVISPGMSTALELRNPSSMNTISGPTSFPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELAHKVDSLTAENVAIRSEISRLSENSEKLKQENATLMEKLKSAQSGRTEALDMNEKRTKHLVSTDIKGPVNKSINEESNICKKKSSSGAKLRQLLDTNPRADCVAAS 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6979799 6985594 - CmaCh06G010370.1 Cma06g01037 296591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01037 432 MobiDBLite consensus disorder prediction 1 30 - -
Cma06g01037 432 Pfam Disordered region downstream of MFMR 151 275 - -
Cma06g01037 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 298 361 IPR004827 GO:0003700|GO:0006355
Cma06g01037 432 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 303 318 IPR004827 GO:0003700|GO:0006355
Cma06g01037 432 CDD bZIP_plant_GBF1 301 349 IPR045314 GO:0003700|GO:0006355
Cma06g01037 432 PANTHER G-BOX-BINDING FACTOR 3 1 432 - -
Cma06g01037 432 SUPERFAMILY Leucine zipper domain 299 356 IPR046347 GO:0003700|GO:0006355
Cma06g01037 432 MobiDBLite consensus disorder prediction 393 418 - -
Cma06g01037 432 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Cma06g01037 432 Gene3D - 299 353 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 13 30 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 216 233 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 298 328 - -
Cma06g01037 432 SMART brlzneu 296 360 IPR004827 GO:0003700|GO:0006355
Cma06g01037 432 Pfam bZIP transcription factor 296 358 IPR004827 GO:0003700|GO:0006355
Cma06g01037 432 MobiDBLite consensus disorder prediction 167 201 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 167 233 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 101 132 - -
Cma06g01037 432 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 432 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma06g01037 432 Coils Coil 330 371 - -
Cma06g01037 432 MobiDBLite consensus disorder prediction 364 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01037 K09060 GBF; plant G-box-binding factor - csv:101213720 658.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01037 Cma-Chr6:6979799 Cma14g02088 Cma-Chr14:14446707 0 dispersed
Cma06g01036 Cma-Chr6:6977880 Cma06g01037 Cma-Chr6:6979799 1.98E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g96 . . . . . . . . Cmo06g01064 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0830 . . . . . . . . . . . . . . . . Cma06g01037 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003687 1 2 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 3 1 1 1 1 1 1 1 1 5 2 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35244 PF16596 MFMR_assoc 7.80E-20 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01037 Cma_Chr06 FPKM 22.674038 25.854397 48.252125 51.909451 16.805037 17.699646 16.964991 15.440825 13.826233 15.427528
Cma06g01037 Cma_Chr00 FPKM 19.342794 19.133408 31.85424 31.759129 10.301596 10.87536 12.948468 9.787798 10.162487 8.561586