Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01039 ATGAAGGATTTGAATTCGGATGTTTTTGACCCAACGGCTGGGATGGATTCGGATTATTCGCGTGCCTCTTGTTCTTCACCATCCGACGCGGATTTTGGATTCGCTTTTAACGATAGTAATTTCTCTGATCGGTTGCTTCGGATTGAGATTATGGGGGAACCGGAAGAGGCCCGTCCAGATTCTGTGGGATGTACGAGCATCCTCGATTGGGCTCGACGGAAGAGACGGAGAGAAGATTGTAAGAAGGATAACGTTGTCGATCTAAATGGATGCCCTGAGGAGCAAGTCTTAAATGGAAGCCATCCTGATATGGATGATGGCATACCTTGTGACAATCTAGATGGTGAGCCTGCTCAAATGATTGAAGAGCTACATTCAGGTGATGAAGCTGCAAATGGCGATGAATCAAGCTGGGGAATGGATTGTTCTACTGTTATTAAAGTCAAAACGTTGCATATCAGCTCTCCAATTTTGGCTGCTAAAAGCCCTTTTTTCTACAAGCTTTTCTCTAATGGGATGAGGGAGTCTGAACAGCGGAATGTGACCTTACGAATCAATGCCTCAGAGGAAGCTGCACTAATGGAGTTGCTGAATTTTATGTATAGCAATACCCTATCTTGTAGCACTGCTTTGTCTTTGCTTGATGTTCTTATGGCCGCCGACAAATTTGAGGTTGCTTCATGCATGAGGTATTGCAGCAGACTTTTAAGAAATTTACCGATGACACCTGAGTCTGCATTGCTATATCTAGAGCTTCCATCCAGTGTCTTAATGGCTGAAGCAGTCCAACCATTGACTGATGCAGCAAAGCAGTATCTTGCTGTTCGCTACAAGGACATAACCAAGTACCAGGATGAGGTTATGGCTTTGCCTCTTGCAGGAGTGGAGGCAATATTGTGTAGTGACGATCTACAGGTTGCATCAGAGGATGCAGTATACGATTTCATCTTGAAGTGGGCTAGAGCTCAGTATTCAAGGTTGGACGAGAGGCGAGAAGTGCTGGGGGCCAGACTTGCACGTTATATTCGATTCCCCTTTATGACTTGTCGAAAGCTTAAGAAAGTTCTGACCTGCAATGACTTCGACCATGAGGTTGCATGCAAACTTGTGCTTGAGGCCCTTTTCTTCAAGGCGGAGGCCCCTCACCGGCAGAGAATCATAGCTGCGGATGAGTCGGCTTCCTCAAACCGCCGATTCTTTATTGAGAGAGCATACAAATACCGTCCAGTCAAGGTTGTTGAGTTTGATTGCCCTCGGCAGCAGTGTGTAGTATACCTGGACCTAAAGCGGGAAGAATGTACAAATTTGTTTCCGTCTGGGAGAGTGTATTCTCAGGCATTCCACTTGGGTGGACAAGGATTTTTCCTTTCAGCTCATTGCAACATGGACCAGCAGAGCTCATTTCACTGTTTTGGGCTTTTCTTGGGAATGCAGGAAAAAGGATCAGTATCTTTTGCAGTAGACTATGAATTTGCTGCAAGATCAAAGCCTACAGAGGAGTTTGTTAGCAAATATAAGGGCAATTACACATTCACTGGAGGCAAGGCTGTTGGCTATAGAAACTTGTTTGCAATACCATGGACTTCTTTCATGGCCGAAGATAGTCTATACTTCATAAATGGAGTCCTCCATCTTAGAGCTGAACTTACCATCAGGCCCTGA 1662 45.19 MKDLNSDVFDPTAGMDSDYSRASCSSPSDADFGFAFNDSNFSDRLLRIEIMGEPEEARPDSVGCTSILDWARRKRRREDCKKDNVVDLNGCPEEQVLNGSHPDMDDGIPCDNLDGEPAQMIEELHSGDEAANGDESSWGMDCSTVIKVKTLHISSPILAAKSPFFYKLFSNGMRESEQRNVTLRINASEEAALMELLNFMYSNTLSCSTALSLLDVLMAADKFEVASCMRYCSRLLRNLPMTPESALLYLELPSSVLMAEAVQPLTDAAKQYLAVRYKDITKYQDEVMALPLAGVEAILCSDDLQVASEDAVYDFILKWARAQYSRLDERREVLGARLARYIRFPFMTCRKLKKVLTCNDFDHEVACKLVLEALFFKAEAPHRQRIIAADESASSNRRFFIERAYKYRPVKVVEFDCPRQQCVVYLDLKREECTNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDSLYFINGVLHLRAELTIRP 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6995740 6999665 - CmaCh06G010390.1 Cma06g01039 296593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01039 553 Pfam BTB/POZ domain 140 237 IPR000210 GO:0005515
Cma06g01039 553 SUPERFAMILY POZ domain 137 237 IPR011333 -
Cma06g01039 553 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN POB1 6 552 - -
Cma06g01039 553 Gene3D - 272 378 - -
Cma06g01039 553 SMART BACK_2 255 357 IPR011705 -
Cma06g01039 553 ProSiteProfiles BTB domain profile. 140 209 IPR000210 GO:0005515
Cma06g01039 553 CDD BTB_POZ_ZBTB_KLHL-like 141 223 - -
Cma06g01039 553 Pfam BTB And C-terminal Kelch 263 355 IPR011705 -
Cma06g01039 553 PANTHER OS02G0260700 PROTEIN 6 552 IPR045890 -
Cma06g01039 553 SUPERFAMILY TRAF domain-like 439 551 - -
Cma06g01039 553 Gene3D Potassium Channel Kv1.1; Chain A 134 263 IPR011333 -
Cma06g01039 553 MobiDBLite consensus disorder prediction 1 22 - -
Cma06g01039 553 SMART BTB_4 140 240 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01039 - - - csv:101213003 1061.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01039 Cma-Chr6:6995740 Cma08g00877 Cma-Chr8:5425081 0 dispersed
Cma14g02090 Cma-Chr14:14463399 Cma06g01039 Cma-Chr6:6995740 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0261 Cone12ag0267 . . . . . . . . . . . . . . . . . Cma06g01039 . Car06g00872 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001470 3 2 3 4 3 2 4 2 2 2 2 2 3 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01039 Cma_Chr06 FPKM 37.524837 43.622627 36.465412 37.238628 29.770037 28.353449 25.953762 106.825836 104.736412 100.315926