Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01057 ATGATCTTTGAGTTTCGAACTGGTTTTCTTCCCCCTTCTTTGCCTGTGTTTGGAAGTGGTGAATTAATTGAAGACCCAGCAGCTATAGCAAAGAGATATCTTTTCTCAAACTTCTTGATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTAGTATTAGTAATCATACCTGCAGCGAAAGATCCAATTCCAACAAAGACAGAGAACATCGTGAAGATTGCGGTTCTTTTGCAGTATATTCCTAGGCTTCTTCGAATTTATCCACAATACAGAGAAGTAACCAAAAACTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCCTTCAATCTTCTTATTTATTTGCAAGCTTGTCATGTTGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGCCAAACCAAATGCTGGCTTGTGGCATGCATGAAAGACGACTGTAGAGACAATTTTCTGTACTGTGAACGTCGTAGTGAAGCAATGTCCTCTTCTACAATTAAGTTTTGCTCTCCTAAGAAATCTGACAAGACAAACACCTTCGACTTTGGGATGTATGCTAAAGCCCTTGAGTTTGACTTTACCAAGACGAGTTTTAGCCACAAATTCTTCCATTCATTCTGGTGGGCTCTGCAAAACGTCAGCTCAAGTGGACAAAACCTTAAAGTAAGCAACTACATGGGGGAGGTTCTTTTTGCTGTCTTCATAGCCATCCTTGGTTTGGTTTTATTTGCCTTACTCATTAGCAATGTTCAGAAATACCTTCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATCAACCGACGAGATATCGAGCATTGGATGGCACATCGTATCCTCCCGGAGGACTTAAGGCAGCGTGTTAGACGATACGATCAATACAAATGGCAGCTAAACAGAGGAGTTAAGGAAGAGGAACTCATTACTAACCTTCCTAAAGACCTTAGGAAAGACATCAAACGCCATCTTTGCTTGTCCCTTCTTAAAAAAGTGACACTTTTTAGCAACATGGACAAGCATCTACTAGACTCAATGTGCGAATATCTCAAGCCTGTGTTATTCACAAAGAGGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATACTATGCTATTCATCATGAAAGGAAAGCTATCTAACATTATAACTTTTGGTTGGAACAACAAGCCTTACACGGACATACTTAAAGCAGGCGACTTCTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCAACCTCCACTTCTCTTCCCATTTCAGCTAGAACAGTTGAATCTCTTACTGAGGTTGAAGCCTTTGCTTTAAAGGCTGATGAGCTGAAATTTGTGACCAGTCAGTTCCATTTCCAGCGCCTTAATAGCAAGCAATTTCAGCTCAGAGTGAGATTCTATTCTCATCAATGGAAAGTTTGGGCTGCCTATAAGGTACAAGAAGCTTGGCATGATTACGTTGAAAGAAAGAAGAGAGGGGGTGGAGATGGTAGATTTCAAGATGCATTGGCCTTGGCATGA 1515 41.12 MIFEFRTGFLPPSLPVFGSGELIEDPAAIAKRYLFSNFLIDILSILPLPQLLVLVIIPAAKDPIPTKTENIVKIAVLLQYIPRLLRIYPQYREVTKNSGILTETAWSGAAFNLLIYLQACHVVGAIWYLLSIERQTKCWLVACMKDDCRDNFLYCERRSEAMSSSTIKFCSPKKSDKTNTFDFGMYAKALEFDFTKTSFSHKFFHSFWWALQNVSSSGQNLKVSNYMGEVLFAVFIAILGLVLFALLISNVQKYLQSTTVKIEQMRINRRDIEHWMAHRILPEDLRQRVRRYDQYKWQLNRGVKEEELITNLPKDLRKDIKRHLCLSLLKKVTLFSNMDKHLLDSMCEYLKPVLFTKRSFILQEGDPIDTMLFIMKGKLSNIITFGWNNKPYTDILKAGDFCGEELVQWAMDPTSTSLPISARTVESLTEVEAFALKADELKFVTSQFHFQRLNSKQFQLRVRFYSHQWKVWAAYKVQEAWHDYVERKKRGGGDGRFQDALALA 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7116344 7120264 + CmaCh06G010570.1 Cma06g01057 296611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01057 504 Pfam Cyclic nucleotide-binding domain 354 442 IPR000595 -
Cma06g01057 504 Gene3D Helix hairpin bin 260 325 - -
Cma06g01057 504 Gene3D - 17 258 - -
Cma06g01057 504 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 1 490 - -
Cma06g01057 504 Gene3D Jelly Rolls 332 449 IPR014710 -
Cma06g01057 504 SUPERFAMILY Voltage-gated potassium channels 29 256 - -
Cma06g01057 504 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 490 - -
Cma06g01057 504 SUPERFAMILY cAMP-binding domain-like 264 449 IPR018490 -
Cma06g01057 504 SMART cnmp_10 334 463 IPR000595 -
Cma06g01057 504 CDD CAP_ED 334 465 IPR000595 -
Cma06g01057 504 Pfam Ion transport protein 1 260 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma06g01057 504 ProSiteProfiles cAMP/cGMP binding motif profile. 334 418 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01057 Cma-Chr6:7116344 Cma14g02105 Cma-Chr14:14540281 0 dispersed
Cma18g01306 Cma-Chr18:10038276 Cma06g01057 Cma-Chr6:7116344 4.12E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01057 K05391 - csv:101206492 752.666