Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01060 ATGGTTGCGGCGCCAGAAAATTCAGATTCCTCTCCCGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAAAAAGCCTTGGTTCCAGTGCCAGTCTCGAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATTAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAGAAAAGGAGAAAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGGCCCAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAATGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCGAAGAAATTTTTGGGATGTTTTTAA 576 45.31 MVAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENRKGEKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7127300 7130700 - CmaCh06G010600.1 Cma06g01060 296614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01060 191 MobiDBLite consensus disorder prediction 74 100 - -
Cma06g01060 191 Pfam Remorin, N-terminal region 12 60 IPR005518 -
Cma06g01060 191 MobiDBLite consensus disorder prediction 1 53 - -
Cma06g01060 191 Coils Coil 109 143 - -
Cma06g01060 191 Pfam Remorin, C-terminal region 87 186 IPR005516 -
Cma06g01060 191 PANTHER CARBOXY-TERMINAL REGION REMORIN 13 83 - -
Cma06g01060 191 PANTHER CARBOXY-TERMINAL REGION REMORIN 87 191 - -
Cma06g01060 191 PANTHER OS02G0117200 PROTEIN 13 83 - -
Cma06g01060 191 PANTHER OS02G0117200 PROTEIN 87 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01060 - - - csv:101203690 267.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01472 Cma06g01060 CCT
Cma02g01472 Cma06g01060 ECH
Cma06g01060 Cma14g02029 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01060 Cma-Chr6:7127300 Cma19g00418 Cma-Chr19:5040692 8.36E-46 dispersed
Cma06g01020 Cma-Chr6:6894684 Cma06g01060 Cma-Chr6:7127300 9.85E-116 transposed
Cma14g02029 Cma-Chr14:14169096 Cma06g01060 Cma-Chr6:7127300 8.05E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
Vvi15g914 . . . . . . . . . . Cma06g01060 Cma14g02029 . Car14g01836 . . . Bhi01g00371 . . . Hepe05g1937 . Lcy11g1961 Cla05g00178 Cam05g0192 Cec05g0191 Cco05g0201 Clacu05g0190 Cmu05g0181 Cre05g0242 Cone14ag0091 Cone15ag0097 Cone11ag0416 Cone18ag1090 Lsi05g02030 . . Cme06g00189 . . . Bda13g00352 . . . . . . Cmo14g02091 . . . . . . . . . . . . . . . . . . . . . . Chy06g00182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009541 2 0 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01060 Cma_Chr06 FPKM 39.448521 40.531815 74.829941 90.61937 26.81179 18.142321 18.060383 64.710701 66.372543 65.777206