Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01069 ATGAGGGACTGCTTCCAAATTCAATCCTGTTTGAACTTCAAACAAAATTTGCAGGATCTCTCTCCGTCAGTTCCAGGAATTTTCGCGTTCGAGGAATCGGCGAATCGCGACAAGCGGCAAAGCAGAACGATTCAGTTTCCTAGAGTTTCTTGTCATGGCGGTTGTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCACGCAGAGAGATTGTAGAAGAGCCAGTAAGAGCTATTAGTGAAGATGTAGTTGGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAAATCCTCACATGGGAAGAAGATTTGCCTCCTCCATGTTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAATTTCCAGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCCTATCATGAGTTTGAGAAGCAAAATTTGCGGAGGATCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCAAGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGTATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCGAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCTTTTATGTGCGCTCACAGGCACTTGCTTCTTGTCACATTGAGTTTATCTGCAAGGGGAACCTCATCTGCACCAGACTTGGTAATCTGATTGATGGGAGTACCAGGGAGGGTAGAACGGATGGAGCTCAAGTAGAAGCTGCAGGTACATCGCCACAAACAAGTCCAGACGCTGAGGCCCTGGAAATTTCCCACTGCAGATCTCAGTCACTTCCATTGGAGCAGGTTAACAGCAGGGAAGTCGGGAGTCCATCTTCGGATTTACGTTTTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGAGAGCATAATAGATCCTTCTCCTTCTCCAAATATTATGAACGGGGTTCGAACTGCAAGAAGCTTGGACGTTAATGAGACTTTTGACAAATTGAGTTTATTGGAAAGGAGAAGTCCATATGAAAGGTCAGACAATTCCTTACGCTCTCCTCGTGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTCGAGTTATGTGAAAATGGGCTGGAGGATGGGAAAACCAGTGATTACCTTTACAATCAATATGAACGGGTGATGATGGAGGCTACAAACGCAAGGCGTGACGCATTTTTAGAGGCAATTGCGCGTAGAAAATCTGAGAAAGAGGCCGTTAATGCTCTATGCAAGGTTAAAGCTGCAGAAGGGTTACATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAAGGCTAAACTTGAAAGCATAAAGAAGCAACTAAATGAAGAGATGGAAGAGGTCCGGATAGCTCAAGATCAGAAGGCAAGCCTTGAGAGAGAACTTTTGGAATCTGATCTGACGGTGAAGGAGTTGGAGCAAAGGATTCTTTCTGCTGTTGAATTGTTACAAAGTTACAAAAGAGAGCGAGAGGAGTTGCGGATTCAACGCGACAGTGCACTTAAGGAAGCAGAGGAGCTTAGAAAAAATCAGCTCGCAGGCACGATCCTTCCACAGTTCTTTACGGAGTTTCCGTTTCGGGAGATCGAGGAAGCTACTAGAAACTTCAATCCCTCCCTGAAGATCGGAGAAGGGGGATATGGGAGCATATATAAAGGCTTCTTGCGCCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTAAGTAAGATGAGACATCCCAATCTTGTCACACTCATTGGAGCTTGTCCCGAAGCTTGGGTTCTCGTCTACGAATACCTCTGTAACGGAAGCCTCGAGGATAAGCTCAGCTGCAAGAACAATACTCCACCTTTACCTTGGCAAGCACGAATACGCATCGCCACTGAGTTATGCTCGGCCATTATGTTTCTTCATTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCTAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAACGCCGAACGACAATGAAACACTTGTTTGGAGAACTGACAATCCCAAGGGAACTTTTCCTTACATGGATCCTGATTATCTTTCATCTGGAGAGCTAACGACGAAGTCAGATGTTTATTCGTTCGGGATTATACTGTTACGATTGTTAACTGGTAGATCTGCAATAGGGATATCAAAGGAAGTCCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCGGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCCTTGAGGTGTTGTGATATGAACCGAAAGAGTCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGGGGCCTATTGTCCATCCAACTCGGTTCGTCCGAACACTTGCAACCTCCCCCTTACTTTATCTGTCCCATATTTCAGGAAGTCATGCTGGATCCACATGTGGCTGCAGATGGTTTTACGTACGAAGCAGAGGCGGCGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTTGTCCCCAACCGTGCTCTTCGTTCGGCTATACAGGAATGGCTCCAAAGGAACTGA 2793 45.22 MRDCFQIQSCLNFKQNLQDLSPSVPGIFAFEESANRDKRQSRTIQFPRVSCHGGCRAGPINYAEASPIMISSRREIVEEPVRAISEDVVGVAVGKDVKECLSVLRYALKSSHGKKICLLHVHVPAQMIPLMGTKFPANSLQKEEVRAYHEFEKQNLRRIMNEYILYCLQEGVQAERLCAEAESIEKGIVDMISLHGIKKLVMGAAVDKCYSRRMVDLKSKKAFYVRSQALASCHIEFICKGNLICTRLGNLIDGSTREGRTDGAQVEAAGTSPQTSPDAEALEISHCRSQSLPLEQVNSREVGSPSSDLRFRGRSLLVDHFRESIIDPSPSPNIMNGVRTARSLDVNETFDKLSLLERRSPYERSDNSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSDYLYNQYERVMMEATNARRDAFLEAIARRKSEKEAVNALCKVKAAEGLHAEELKQRKEVEQELAREKAKLESIKKQLNEEMEEVRIAQDQKASLERELLESDLTVKELEQRILSAVELLQSYKREREELRIQRDSALKEAEELRKNQLAGTILPQFFTEFPFREIEEATRNFNPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLVYEYLCNGSLEDKLSCKNNTPPLPWQARIRIATELCSAIMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDETPNDNETLVWRTDNPKGTFPYMDPDYLSSGELTTKSDVYSFGIILLRLLTGRSAIGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSSEHLQPPPYFICPIFQEVMLDPHVAADGFTYEAEAARGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7196334 7202274 + CmaCh06G010690.1 Cma06g01069 296623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01069 930 SUPERFAMILY RING/U-box 854 930 - -
Cma06g01069 930 SUPERFAMILY Protein kinase-like (PK-like) 551 829 IPR011009 -
Cma06g01069 930 ProSiteProfiles Protein kinase domain profile. 571 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01069 930 CDD RING-Ubox_WDSUB1_like 864 905 - -
Cma06g01069 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 859 930 IPR013083 -
Cma06g01069 930 ProSitePatterns Protein kinases ATP-binding region signature. 577 598 IPR017441 GO:0005524
Cma06g01069 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Cma06g01069 930 ProSiteProfiles U-box domain profile. 859 930 IPR003613 GO:0004842|GO:0016567
Cma06g01069 930 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 84 926 - -
Cma06g01069 930 SMART serkin_6 571 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01069 930 SMART Ubox_2 863 926 IPR003613 GO:0004842|GO:0016567
Cma06g01069 930 Pfam U-box domain 861 930 IPR003613 GO:0004842|GO:0016567
Cma06g01069 930 Coils Coil 441 545 - -
Cma06g01069 930 MobiDBLite consensus disorder prediction 257 279 - -
Cma06g01069 930 Pfam Protein kinase domain 575 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01069 930 Gene3D Phosphorylase Kinase; domain 1 552 643 - -
Cma06g01069 930 PANTHER OS02G0152300 PROTEIN 84 926 - -
Cma06g01069 930 CDD STK_N 88 241 - -
Cma06g01069 930 Gene3D Transferase(Phosphotransferase) domain 1 644 843 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01069 Cma14g02042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00598 Cma-Chr1:3145951 Cma06g01069 Cma-Chr6:7196334 6.81E-22 dispersed
Cma02g00804 Cma-Chr2:4766465 Cma06g01069 Cma-Chr6:7196334 2.69E-153 dispersed
Cma06g01069 Cma-Chr6:7196334 Cma17g00434 Cma-Chr17:2556606 0 dispersed
Cma14g02042 Cma-Chr14:14233727 Cma06g01069 Cma-Chr6:7196334 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68649 PF00069 Pkinase 5.30E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01069 - - csv:101211387 1447.95