Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01069 | ATGAGGGACTGCTTCCAAATTCAATCCTGTTTGAACTTCAAACAAAATTTGCAGGATCTCTCTCCGTCAGTTCCAGGAATTTTCGCGTTCGAGGAATCGGCGAATCGCGACAAGCGGCAAAGCAGAACGATTCAGTTTCCTAGAGTTTCTTGTCATGGCGGTTGTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCACGCAGAGAGATTGTAGAAGAGCCAGTAAGAGCTATTAGTGAAGATGTAGTTGGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAAATCCTCACATGGGAAGAAGATTTGCCTCCTCCATGTTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAATTTCCAGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCCTATCATGAGTTTGAGAAGCAAAATTTGCGGAGGATCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCAAGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGTATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCGAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCTTTTATGTGCGCTCACAGGCACTTGCTTCTTGTCACATTGAGTTTATCTGCAAGGGGAACCTCATCTGCACCAGACTTGGTAATCTGATTGATGGGAGTACCAGGGAGGGTAGAACGGATGGAGCTCAAGTAGAAGCTGCAGGTACATCGCCACAAACAAGTCCAGACGCTGAGGCCCTGGAAATTTCCCACTGCAGATCTCAGTCACTTCCATTGGAGCAGGTTAACAGCAGGGAAGTCGGGAGTCCATCTTCGGATTTACGTTTTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGAGAGCATAATAGATCCTTCTCCTTCTCCAAATATTATGAACGGGGTTCGAACTGCAAGAAGCTTGGACGTTAATGAGACTTTTGACAAATTGAGTTTATTGGAAAGGAGAAGTCCATATGAAAGGTCAGACAATTCCTTACGCTCTCCTCGTGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTCGAGTTATGTGAAAATGGGCTGGAGGATGGGAAAACCAGTGATTACCTTTACAATCAATATGAACGGGTGATGATGGAGGCTACAAACGCAAGGCGTGACGCATTTTTAGAGGCAATTGCGCGTAGAAAATCTGAGAAAGAGGCCGTTAATGCTCTATGCAAGGTTAAAGCTGCAGAAGGGTTACATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAAGGCTAAACTTGAAAGCATAAAGAAGCAACTAAATGAAGAGATGGAAGAGGTCCGGATAGCTCAAGATCAGAAGGCAAGCCTTGAGAGAGAACTTTTGGAATCTGATCTGACGGTGAAGGAGTTGGAGCAAAGGATTCTTTCTGCTGTTGAATTGTTACAAAGTTACAAAAGAGAGCGAGAGGAGTTGCGGATTCAACGCGACAGTGCACTTAAGGAAGCAGAGGAGCTTAGAAAAAATCAGCTCGCAGGCACGATCCTTCCACAGTTCTTTACGGAGTTTCCGTTTCGGGAGATCGAGGAAGCTACTAGAAACTTCAATCCCTCCCTGAAGATCGGAGAAGGGGGATATGGGAGCATATATAAAGGCTTCTTGCGCCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTAAGTAAGATGAGACATCCCAATCTTGTCACACTCATTGGAGCTTGTCCCGAAGCTTGGGTTCTCGTCTACGAATACCTCTGTAACGGAAGCCTCGAGGATAAGCTCAGCTGCAAGAACAATACTCCACCTTTACCTTGGCAAGCACGAATACGCATCGCCACTGAGTTATGCTCGGCCATTATGTTTCTTCATTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCTAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAACGCCGAACGACAATGAAACACTTGTTTGGAGAACTGACAATCCCAAGGGAACTTTTCCTTACATGGATCCTGATTATCTTTCATCTGGAGAGCTAACGACGAAGTCAGATGTTTATTCGTTCGGGATTATACTGTTACGATTGTTAACTGGTAGATCTGCAATAGGGATATCAAAGGAAGTCCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCGGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCCTTGAGGTGTTGTGATATGAACCGAAAGAGTCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGGGGCCTATTGTCCATCCAACTCGGTTCGTCCGAACACTTGCAACCTCCCCCTTACTTTATCTGTCCCATATTTCAGGAAGTCATGCTGGATCCACATGTGGCTGCAGATGGTTTTACGTACGAAGCAGAGGCGGCGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTTGTCCCCAACCGTGCTCTTCGTTCGGCTATACAGGAATGGCTCCAAAGGAACTGA | 2793 | 45.22 | MRDCFQIQSCLNFKQNLQDLSPSVPGIFAFEESANRDKRQSRTIQFPRVSCHGGCRAGPINYAEASPIMISSRREIVEEPVRAISEDVVGVAVGKDVKECLSVLRYALKSSHGKKICLLHVHVPAQMIPLMGTKFPANSLQKEEVRAYHEFEKQNLRRIMNEYILYCLQEGVQAERLCAEAESIEKGIVDMISLHGIKKLVMGAAVDKCYSRRMVDLKSKKAFYVRSQALASCHIEFICKGNLICTRLGNLIDGSTREGRTDGAQVEAAGTSPQTSPDAEALEISHCRSQSLPLEQVNSREVGSPSSDLRFRGRSLLVDHFRESIIDPSPSPNIMNGVRTARSLDVNETFDKLSLLERRSPYERSDNSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSDYLYNQYERVMMEATNARRDAFLEAIARRKSEKEAVNALCKVKAAEGLHAEELKQRKEVEQELAREKAKLESIKKQLNEEMEEVRIAQDQKASLERELLESDLTVKELEQRILSAVELLQSYKREREELRIQRDSALKEAEELRKNQLAGTILPQFFTEFPFREIEEATRNFNPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLVYEYLCNGSLEDKLSCKNNTPPLPWQARIRIATELCSAIMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDETPNDNETLVWRTDNPKGTFPYMDPDYLSSGELTTKSDVYSFGIILLRLLTGRSAIGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSSEHLQPPPYFICPIFQEVMLDPHVAADGFTYEAEAARGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 930 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7196334 | 7202274 | + | CmaCh06G010690.1 | Cma06g01069 | 296623 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01069 | 930 | SUPERFAMILY | RING/U-box | 854 | 930 | - | - | |
Cma06g01069 | 930 | SUPERFAMILY | Protein kinase-like (PK-like) | 551 | 829 | IPR011009 | - | |
Cma06g01069 | 930 | ProSiteProfiles | Protein kinase domain profile. | 571 | 864 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01069 | 930 | CDD | RING-Ubox_WDSUB1_like | 864 | 905 | - | - | |
Cma06g01069 | 930 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 859 | 930 | IPR013083 | - | |
Cma06g01069 | 930 | ProSitePatterns | Protein kinases ATP-binding region signature. | 577 | 598 | IPR017441 | GO:0005524 | |
Cma06g01069 | 930 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 689 | 701 | IPR008271 | GO:0004672|GO:0006468 | |
Cma06g01069 | 930 | ProSiteProfiles | U-box domain profile. | 859 | 930 | IPR003613 | GO:0004842|GO:0016567 | |
Cma06g01069 | 930 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 33 | 84 | 926 | - | - | |
Cma06g01069 | 930 | SMART | serkin_6 | 571 | 837 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01069 | 930 | SMART | Ubox_2 | 863 | 926 | IPR003613 | GO:0004842|GO:0016567 | |
Cma06g01069 | 930 | Pfam | U-box domain | 861 | 930 | IPR003613 | GO:0004842|GO:0016567 | |
Cma06g01069 | 930 | Coils | Coil | 441 | 545 | - | - | |
Cma06g01069 | 930 | MobiDBLite | consensus disorder prediction | 257 | 279 | - | - | |
Cma06g01069 | 930 | Pfam | Protein kinase domain | 575 | 827 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01069 | 930 | Gene3D | Phosphorylase Kinase; domain 1 | 552 | 643 | - | - | |
Cma06g01069 | 930 | PANTHER | OS02G0152300 PROTEIN | 84 | 926 | - | - | |
Cma06g01069 | 930 | CDD | STK_N | 88 | 241 | - | - | |
Cma06g01069 | 930 | Gene3D | Transferase(Phosphotransferase) domain 1 | 644 | 843 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01069 | Cma14g02042 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00598 | Cma-Chr1:3145951 | Cma06g01069 | Cma-Chr6:7196334 | 6.81E-22 | dispersed | |
Cma02g00804 | Cma-Chr2:4766465 | Cma06g01069 | Cma-Chr6:7196334 | 2.69E-153 | dispersed | |
Cma06g01069 | Cma-Chr6:7196334 | Cma17g00434 | Cma-Chr17:2556606 | 0 | dispersed | |
Cma14g02042 | Cma-Chr14:14233727 | Cma06g01069 | Cma-Chr6:7196334 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68649 | PF00069 | Pkinase | 5.30E-41 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01069 | - | - | csv:101211387 | 1447.95 |