Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01080 ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAGTCCACAACCGACCATTCTCCTCCCATTTCGAAGGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTGGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGTGGAGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCACTTTGGGAGATGGTACAAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTAGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTTGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCGCCCGAGTACGCTTGCACGGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTTGCTCTTCGGTGTGTCGATCCAGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTTGGTAAGGATGCTTCTCATTCAACTCAAGGTCATCAACACGCGCACCGGGCCGTTCCGAGACGAGTTAACCATCAGAAAGATGAAGGAACATGTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAAGTAGAAGCTATAAGAATCACCCCACATCCGTTCTCGTTAGATATGCGGCGTCTGCTCGGTCTCCTCAAATCCTAGTTGCTTCCTGTCTTGATATCGATTTACAAAACTTTTGCTCCTAG 1581 45.92 MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTTDHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGHQHAHRAVPRRVNHQKDEGTCSNISEGDSDGNIQHPSRSYKNHPTSVLVRYAASARSPQILVASCLDIDLQNFCS 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7267301 7270651 - CmaCh06G010800.1 Cma06g01080 296634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01080 526 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 446 - -
Cma06g01080 526 ProSiteProfiles Protein kinase domain profile. 157 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01080 526 CDD STKc_IRAK 163 429 - -
Cma06g01080 526 MobiDBLite consensus disorder prediction 443 492 - -
Cma06g01080 526 MobiDBLite consensus disorder prediction 110 129 - -
Cma06g01080 526 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Cma06g01080 526 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Cma06g01080 526 Pfam Protein tyrosine and serine/threonine kinase 160 428 IPR001245 GO:0004672|GO:0006468
Cma06g01080 526 MobiDBLite consensus disorder prediction 475 492 - -
Cma06g01080 526 Gene3D Phosphorylase Kinase; domain 1 132 232 - -
Cma06g01080 526 PANTHER OS01G0323000 PROTEIN 2 446 - -
Cma06g01080 526 SMART serkin_6 157 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01080 526 MobiDBLite consensus disorder prediction 115 129 - -
Cma06g01080 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Cma06g01080 526 Gene3D Transferase(Phosphotransferase) domain 1 233 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00971 Cma-Chr3:6874473 Cma06g01080 Cma-Chr6:7267301 0 dispersed
Cma05g00175 Cma-Chr5:740818 Cma06g01080 Cma-Chr6:7267301 0 dispersed
Cma06g01080 Cma-Chr6:7267301 Cma07g00696 Cma-Chr7:3064864 0 dispersed
Cma14g02059 Cma-Chr14:14306599 Cma06g01080 Cma-Chr6:7267301 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68651 PF07714 PK_Tyr_Ser-Thr 1.10E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01080 - - cmos:111449863 924.08