Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01080 | ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAGTCCACAACCGACCATTCTCCTCCCATTTCGAAGGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTGGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGTGGAGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCACTTTGGGAGATGGTACAAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTAGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTTGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCGCCCGAGTACGCTTGCACGGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTTGCTCTTCGGTGTGTCGATCCAGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTTGGTAAGGATGCTTCTCATTCAACTCAAGGTCATCAACACGCGCACCGGGCCGTTCCGAGACGAGTTAACCATCAGAAAGATGAAGGAACATGTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAAGTAGAAGCTATAAGAATCACCCCACATCCGTTCTCGTTAGATATGCGGCGTCTGCTCGGTCTCCTCAAATCCTAGTTGCTTCCTGTCTTGATATCGATTTACAAAACTTTTGCTCCTAG | 1581 | 45.92 | MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTTDHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGHQHAHRAVPRRVNHQKDEGTCSNISEGDSDGNIQHPSRSYKNHPTSVLVRYAASARSPQILVASCLDIDLQNFCS | 526 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7267301 | 7270651 | - | CmaCh06G010800.1 | Cma06g01080 | 296634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01080 | 526 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 2 | 446 | - | - | |
Cma06g01080 | 526 | ProSiteProfiles | Protein kinase domain profile. | 157 | 434 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01080 | 526 | CDD | STKc_IRAK | 163 | 429 | - | - | |
Cma06g01080 | 526 | MobiDBLite | consensus disorder prediction | 443 | 492 | - | - | |
Cma06g01080 | 526 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
Cma06g01080 | 526 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 185 | IPR017441 | GO:0005524 | |
Cma06g01080 | 526 | SUPERFAMILY | Protein kinase-like (PK-like) | 136 | 429 | IPR011009 | - | |
Cma06g01080 | 526 | Pfam | Protein tyrosine and serine/threonine kinase | 160 | 428 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01080 | 526 | MobiDBLite | consensus disorder prediction | 475 | 492 | - | - | |
Cma06g01080 | 526 | Gene3D | Phosphorylase Kinase; domain 1 | 132 | 232 | - | - | |
Cma06g01080 | 526 | PANTHER | OS01G0323000 PROTEIN | 2 | 446 | - | - | |
Cma06g01080 | 526 | SMART | serkin_6 | 157 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01080 | 526 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
Cma06g01080 | 526 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672|GO:0006468 | |
Cma06g01080 | 526 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 444 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00971 | Cma-Chr3:6874473 | Cma06g01080 | Cma-Chr6:7267301 | 0 | dispersed | |
Cma05g00175 | Cma-Chr5:740818 | Cma06g01080 | Cma-Chr6:7267301 | 0 | dispersed | |
Cma06g01080 | Cma-Chr6:7267301 | Cma07g00696 | Cma-Chr7:3064864 | 0 | dispersed | |
Cma14g02059 | Cma-Chr14:14306599 | Cma06g01080 | Cma-Chr6:7267301 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68651 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-45 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01080 | - | - | cmos:111449863 | 924.08 |