Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01085 ATGGATGGACTATATAGCCGTACCTCATTAGGCAATTCCTTCACAAAATTTACACTCTATTCTCTCTCCTCTTCCCCTCTTCTTCCGCCATTTCTGCCCAAAAACGGAAAACTCAAATTCTCATCAATGAAGAAGGTCGTTCTGAAACTGGATTTACCGGACGATAAAGCCAAGAAAAAGGCCTTGAAATTGGTCTCCACACTCTCAGGAATCGATTCTATTGCGATGGATATGAAAGAAAAGAAGCTTACAGTGATCGGAGCGGTGGATCCGGTGACGATCGTGAGCAAACTGAGGAAGTTTTGGCCGGCGGACTTAATCTCCGTAGGACCGGCGGTGGAGCCGAAGAAGGACGAGCCGAAAAAGGAAGAAGGAAAGAAGGAAGAGGGGAAGAAGGAAGAAGAGAAGAAAGGAGAAGCGAAGAAGGAAGAAGAGAAGAAAGAAGGAGAAGAGAAGAAAGAAGGAGAAGAAAAGAAGAATCCGAATCCAAACGACGCCGTTTTGGAACTGGTGAGAGCTTACAGAGCTTACAATCCTTATCTTACAACTCATTATTACGCGCAGAGCATAGAGGAGAATCCGAATGCCTGCGCCATCTGCTAA 603 45.44 MDGLYSRTSLGNSFTKFTLYSLSSSPLLPPFLPKNGKLKFSSMKKVVLKLDLPDDKAKKKALKLVSTLSGIDSIAMDMKEKKLTVIGAVDPVTIVSKLRKFWPADLISVGPAVEPKKDEPKKEEGKKEEGKKEEEKKGEAKKEEEKKEGEEKKEGEEKKNPNPNDAVLELVRAYRAYNPYLTTHYYAQSIEENPNACAIC 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7304618 7305817 + CmaCh06G010850.1 Cma06g01085 296639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01085 200 MobiDBLite consensus disorder prediction 112 166 - -
Cma06g01085 200 Coils Coil 133 159 - -
Cma06g01085 200 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 43 200 - -
Cma06g01085 200 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 43 200 - -
Cma06g01085 200 MobiDBLite consensus disorder prediction 112 163 - -
Cma06g01085 200 SUPERFAMILY HMA, heavy metal-associated domain 42 100 IPR036163 GO:0046872
Cma06g01085 200 Gene3D - 40 114 - -
Cma06g01085 200 Pfam Heavy-metal-associated domain 57 100 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01085 - - - cmax:111473296 256.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01085 Cma15g01252 CCT
Cma06g01085 Cma15g01252 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01085 Cma-Chr6:7304618 Cma15g01252 Cma-Chr15:7945963 1.25E-29 dispersed
Cma06g01085 Cma-Chr6:7304618 Cma08g00886 Cma-Chr8:5490461 1.65E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g39 . . . . . . . . . . . Cma15g01252 . Car15g01129 . . . . . . . . . . Cla07g00757 Cam07g0809 Cec07g0870 Cco07g0847 Clacu07g0790 Cmu07g0797 Cre07g1153 . . Cone6ag0809 . . Csa05g00244 Chy09g01260 Cme07g01617 . . . . . . . . . . Cmo15g01127 Cma06g01085 . . . . Cpe13g00133 Bhi12g00309 . . . Hepe06g1514 . Lcy12g1614 Cla01g00230 Cam01g0236 Cec01g0228 Cco01g0242 Clacu01g0233 Cmu01g0226 Cre09g2284 Lsi09g00219 Csa04g00608 Chy07g01204 Cme09g01797
Vvi15g837 Blo01g00212 Blo12g00240 Bda03g00995 . Bpe14g00972 Bpe05g01002 Bma04g00892 . . . Cma06g01085 . . . . . . Bhi01g00335 . . . . . . Cla05g00142 Cam05g0155 Cec05g0154 Cco05g0163 Clacu05g0152 Cmu05g0145 Cre05g0208 Cone14ag0054 Cone15ag0421 Cone11ag0445 Cone18ag1063 Lsi05g02067 . . Cme06g00153 . Blo16g00440 Bda11g00238 Bda13g00356 Bpe13g00958 Bpe04g00926 Bma02g01064 Bma06g01185 . . . . . . . . . . . . . . . . Cla06g00318 Cam06g0346 Cec06g0350 Cco06g0346 Clacu06g0337 Cmu06g0334 Cre06g1105 Lsi09g01595 Csa03g00863 . Cme11g02189
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01085 Cma_Chr06 FPKM 40.437931 42.482162 46.765095 51.366699 10.921141 7.926268 12.016566 4.295619 4.830086 4.729514