Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01087 | ATGGAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTTAGAGGCTACTCCGCCATGACCTCCGCCGCTGTTCCTTCTTCCGACTCTTACTCTGTTCCTTCCAATTCCAATAACTCTGTTCCTATGGCGTTTGGCAGAGACCAAACGAACCGTATGTTGTCGCTTCAAGATCCGTTTGATGGGTCCAATTGTAATTCTACTGAGGAATTGCAGGAGTTTTTCAACCCCTTTTTACCTAAATCTCAACGCTCACCACCACTGCCGCCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGTCAAAATTCTGACCCATCAGAAGCAACTACAGAACACCCATCTCCCTAAACAGCTCCATTCAACCTCCGTTTCTGCTCCGAGATCCAAACGCCGGAAGAACCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGGCTCTGTCCTCGGACATTTGGGCTTGGAGAAAATATGGACAAAAACCCATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGATCCGGGAATGTTCATAGTTACTTACACGGCGGAGCACAACCACCCGGCGCCAACTCATCGGAATTCCCTCGCCGGCTCCACCCGTCAGAAGCCCAACACGCCGACACCCACCGACGCCGGATCGGAAAAACCCGACGCGAAACAGCTCGTTTGCTCGTCCGAAGATCTGAGTACGATCATGGAGAGCAAAGAAGAAGAGAAAGAGGAATCATTGGCGGAAGACGAAGAAGACAACGATCTGGGGGACTCTGATTTAATCGTCAACGACGATTTCTACGTGGGGTTTGAAGAACTCGACAGTCCTAACGCCGACGACTGCTTTTCCGATGATTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTGTAAAACTCCCCTGTTAA | 969 | 48.61 | MEMEVDWDLHAVVRGYSAMTSAAVPSSDSYSVPSNSNNSVPMAFGRDQTNRMLSLQDPFDGSNCNSTEELQEFFNPFLPKSQRSPPLPPPAPPLLSSPAVKILTHQKQLQNTHLPKQLHSTSVSAPRSKRRKNQLKKVCQVPAEALSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPNTPTPTDAGSEKPDAKQLVCSSEDLSTIMESKEEEKEESLAEDEEDNDLGDSDLIVNDDFYVGFEELDSPNADDCFSDDFPXXXXXXXXXXXXXIVKLPC | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7334632 | 7335810 | + | CmaCh06G010870.1 | Cma06g01087 | 296641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01087 | 322 | Pfam | WRKY DNA -binding domain | 149 | 206 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Cma06g01087 | 322 | ProSiteProfiles | WRKY domain profile. | 142 | 208 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 81 | 96 | - | - | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 109 | 124 | - | - | |
Cma06g01087 | 322 | SUPERFAMILY | WRKY DNA-binding domain | 145 | 208 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 205 | 230 | - | - | |
Cma06g01087 | 322 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 3 | 302 | - | - | |
Cma06g01087 | 322 | Gene3D | WRKY domain | 131 | 201 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01087 | 322 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 3 | 302 | IPR044810 | GO:0003700 | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 199 | 276 | - | - | |
Cma06g01087 | 322 | SMART | WRKY_cls | 147 | 207 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 258 | 275 | - | - | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 24 | 44 | - | - | |
Cma06g01087 | 322 | MobiDBLite | consensus disorder prediction | 75 | 97 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01087 | Cma14g02067 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01084 | Cma-Chr2:6451561 | Cma06g01087 | Cma-Chr6:7334632 | 5.50E-54 | dispersed | |
Cma04g00724 | Cma-Chr4:3682891 | Cma06g01087 | Cma-Chr6:7334632 | 9.34E-44 | dispersed | |
Cma06g01087 | Cma-Chr6:7334632 | Cma15g01067 | Cma-Chr15:6759134 | 9.29E-19 | dispersed | |
Cma01g00286 | Cma-Chr1:1363482 | Cma06g01087 | Cma-Chr6:7334632 | 5.73E-33 | transposed | |
Cma14g02067 | Cma-Chr14:14362158 | Cma06g01087 | Cma-Chr6:7334632 | 6.07E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35247 | PF03106 | WRKY | 4.20E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01087 | K13425 | - | csv:101217082 | 434.491 |