Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01087 ATGGAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTTAGAGGCTACTCCGCCATGACCTCCGCCGCTGTTCCTTCTTCCGACTCTTACTCTGTTCCTTCCAATTCCAATAACTCTGTTCCTATGGCGTTTGGCAGAGACCAAACGAACCGTATGTTGTCGCTTCAAGATCCGTTTGATGGGTCCAATTGTAATTCTACTGAGGAATTGCAGGAGTTTTTCAACCCCTTTTTACCTAAATCTCAACGCTCACCACCACTGCCGCCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGTCAAAATTCTGACCCATCAGAAGCAACTACAGAACACCCATCTCCCTAAACAGCTCCATTCAACCTCCGTTTCTGCTCCGAGATCCAAACGCCGGAAGAACCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGGCTCTGTCCTCGGACATTTGGGCTTGGAGAAAATATGGACAAAAACCCATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGATCCGGGAATGTTCATAGTTACTTACACGGCGGAGCACAACCACCCGGCGCCAACTCATCGGAATTCCCTCGCCGGCTCCACCCGTCAGAAGCCCAACACGCCGACACCCACCGACGCCGGATCGGAAAAACCCGACGCGAAACAGCTCGTTTGCTCGTCCGAAGATCTGAGTACGATCATGGAGAGCAAAGAAGAAGAGAAAGAGGAATCATTGGCGGAAGACGAAGAAGACAACGATCTGGGGGACTCTGATTTAATCGTCAACGACGATTTCTACGTGGGGTTTGAAGAACTCGACAGTCCTAACGCCGACGACTGCTTTTCCGATGATTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTGTAAAACTCCCCTGTTAA 969 48.61 MEMEVDWDLHAVVRGYSAMTSAAVPSSDSYSVPSNSNNSVPMAFGRDQTNRMLSLQDPFDGSNCNSTEELQEFFNPFLPKSQRSPPLPPPAPPLLSSPAVKILTHQKQLQNTHLPKQLHSTSVSAPRSKRRKNQLKKVCQVPAEALSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPNTPTPTDAGSEKPDAKQLVCSSEDLSTIMESKEEEKEESLAEDEEDNDLGDSDLIVNDDFYVGFEELDSPNADDCFSDDFPXXXXXXXXXXXXXIVKLPC 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7334632 7335810 + CmaCh06G010870.1 Cma06g01087 296641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01087 322 Pfam WRKY DNA -binding domain 149 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01087 322 MobiDBLite consensus disorder prediction 109 133 - -
Cma06g01087 322 ProSiteProfiles WRKY domain profile. 142 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01087 322 MobiDBLite consensus disorder prediction 81 96 - -
Cma06g01087 322 MobiDBLite consensus disorder prediction 109 124 - -
Cma06g01087 322 SUPERFAMILY WRKY DNA-binding domain 145 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g01087 322 MobiDBLite consensus disorder prediction 205 230 - -
Cma06g01087 322 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 302 - -
Cma06g01087 322 Gene3D WRKY domain 131 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g01087 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 302 IPR044810 GO:0003700
Cma06g01087 322 MobiDBLite consensus disorder prediction 199 276 - -
Cma06g01087 322 SMART WRKY_cls 147 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01087 322 MobiDBLite consensus disorder prediction 258 275 - -
Cma06g01087 322 MobiDBLite consensus disorder prediction 24 44 - -
Cma06g01087 322 MobiDBLite consensus disorder prediction 75 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01087 Cma14g02067 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01084 Cma-Chr2:6451561 Cma06g01087 Cma-Chr6:7334632 5.50E-54 dispersed
Cma04g00724 Cma-Chr4:3682891 Cma06g01087 Cma-Chr6:7334632 9.34E-44 dispersed
Cma06g01087 Cma-Chr6:7334632 Cma15g01067 Cma-Chr15:6759134 9.29E-19 dispersed
Cma01g00286 Cma-Chr1:1363482 Cma06g01087 Cma-Chr6:7334632 5.73E-33 transposed
Cma14g02067 Cma-Chr14:14362158 Cma06g01087 Cma-Chr6:7334632 6.07E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35247 PF03106 WRKY 4.20E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01087 K13425 - csv:101217082 434.491