Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01089 ATGAACAATAGAGGAAGGTATCCTCCTGGGATCGGTGCTGGACGAGGCGGAGGCGTGAATGCGAATCCTTCGTTTCAGTCAAGACCACATCAGCAGCAATATGTACAAAGAAATTTGGTACCGAATCAGCAGTATCAACAACAGCAGCACCAGAACCAGAACCAGAACCAGAACCAACACCAGCACCAACATCAACACCAAAACCAGCAGCTTCAACAACAACAGTGGCTGAAAAGGAACCAGTTAGGTGGCGGTCCTGCCGATTCTAACGTTGACGAGGTGGAGAAGACCGTGCAGACGGAGGCTGTTGACTCGAGTTCACAAGATTGGAAGGCTAGGTTAAAGATTCCACCGCCTGATACACGATATAAAACAGAGGATGTGACGGCTACCAAAGGAAATGAATTTGAGGACTATTTTCTAAAACGTGAATTACTCATGGGAATCTATGAGAAAGGCTTTGAAAGACCATCTCCTATTCAAGAAGAAAGTATTCCGATCGCTTTAACTGGTAGTGATATTCTTGCTAGAGCGAAGAACGGAACTGGAAAGACAGCTGCATTTTGCATTCCCGCCTTAGAAAAGATTGATCAGGATAACAATGTAATCCAAGTTGTTATCCTCGTTCCAACTCGAGAGTTGGCTCTTCAAACTTCACAAGTGTGCAAGGAACTCGGAAAGAATTTGAATATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTAAAGGATGATATCATGCGACTATATCAACCAGTTCATTTATTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAAAAGGGTGTTTGTGTACTGAAAGATTGTTCTATGCTTATCATGGATGAGGCAGACAAGCTCTTGTCTCCAGAGTTCCAACCCTCAATAGAGCAGCTGATACGCTTTTTGCCTGCAAATCGGCAGGTTCTTATGTATTCCGCTACCTTTCCCGTTACTGTGAAGGACTTCAAAGATAGATATCTTCACAGGCCCTATATTATAAACTTAATGGACGAGCTCACTCTAAAGGGTATCACCCAATTCTATGCATTTGTTGAAGAAAGACAAAAAGTGCACTGCCTTAATACTCTTTTCTCTAAGCTGCAAATTAACCAGTCAATTATCTTCTGCAATTCGGTAAATCGAGTTGAGTTGTTAGCCAAAAAAATTACTGAACTTGGTTATTCTTGTTTCTATATTCATGCAAAGATGCTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGAAATGGTGCATGCAGAAATCTCGTTTGTACTGATTTATTTACAAGAGGAATAGACATTCAAGCAGTAAACGTCGTTATTAACTTCGATTTCCCCAAGAATTCAGAGACGTATCTACACAGGGTTGGACGATCTGGAAGGTTTGGACACCTTGGGTTAGCTGTGAATTTAATCACCTATGAGGATCGTTTCAATTTGTACAGGATTGAACAAGAACTTGGAACGGAAATAAAACAAATACCACCCCATATTGACCAGGCAATCTACTGCCGGTAA 1527 41.39 MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQQHQNQNQNQNQHQHQHQHQNQQLQQQQWLKRNQLGGGPADSNVDEVEKTVQTEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEQLIRFLPANRQVLMYSATFPVTVKDFKDRYLHRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7351210 7357215 - CmaCh06G010890.1 Cma06g01089 296643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01089 508 CDD SF2_C_DEAD 346 475 - -
Cma06g01089 508 Gene3D - 93 338 IPR027417 -
Cma06g01089 508 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Cma06g01089 508 Gene3D - 339 508 IPR027417 -
Cma06g01089 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
Cma06g01089 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 488 IPR027417 -
Cma06g01089 508 MobiDBLite consensus disorder prediction 1 74 - -
Cma06g01089 508 Pfam Helicase conserved C-terminal domain 360 466 IPR001650 -
Cma06g01089 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Cma06g01089 508 MobiDBLite consensus disorder prediction 20 74 - -
Cma06g01089 508 CDD DEADc_DDX6 136 336 - -
Cma06g01089 508 SMART ultradead3 153 349 IPR014001 -
Cma06g01089 508 SMART helicmild6 385 466 IPR001650 -
Cma06g01089 508 Coils Coil 54 74 - -
Cma06g01089 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 505 IPR001650 -
Cma06g01089 508 MobiDBLite consensus disorder prediction 97 125 - -
Cma06g01089 508 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 13 508 - -
Cma06g01089 508 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 13 508 - -
Cma06g01089 508 Pfam DEAD/DEAH box helicase 159 323 IPR011545 GO:0003676|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01089 K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] - csv:101203201 924.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01089 Cma14g02025 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00386 Cma-Chr5:1695936 Cma06g01089 Cma-Chr6:7351210 3.93E-80 dispersed
Cma06g01089 Cma-Chr6:7351210 Cma14g00966 Cma-Chr14:5054263 1.60E-89 dispersed
Cma14g02025 Cma-Chr14:14149081 Cma06g01089 Cma-Chr6:7351210 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
Vvi15g916 . . . . Bpe14g00974 . . . . . Cma06g01089 Cma14g02025 Car06g00924 Car14g01834 . Cpe08g00529 Cpe03g01722 Bhi01g00374 . . . . . . Cla05g00180 Cam05g0194 Cec05g0193 Cco05g0203 . Cmu05g0184 Cre05g0244 Cone14ag0345 . Cone11ag0414 Cone18ag1092 Lsi05g02028 . . Cme06g00191 Blo02g00351 . . Bda13g00354 . . Bma02g01063 . . Cmo06g01115 Cmo14g02087 . . . . . . . . . . . . . . . . . . . . . Csa03g00903 Chy06g00183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004275 2 1 2 2 2 1 2 1 1 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01089 Cma_Chr06 FPKM 28.684916 29.215557 23.1136 24.092249 40.028229 39.42831 42.679424 23.444889 22.541449 23.226892