Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01093 ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTCGTCGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCGAACTTTCAATCCAAGTCTGATAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGTGTCCTGTACTGCAAACACCATTTTGCTCAGCTCTTCATGGTCAAGGGCAACTATACCCATGTTCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACATGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGTTGAGCAATCTTAA 612 45.92 MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPHFDQLFKESGNFANFQSKSDKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAEHAEKDGKPQPDSEDGAVEQS 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7377007 7378645 + CmaCh06G010930.1 Cma06g01093 296647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01093 203 Pfam LIM domain 10 64 IPR001781 -
Cma06g01093 203 Pfam LIM domain 103 158 IPR001781 -
Cma06g01093 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 75 - -
Cma06g01093 203 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cma06g01093 203 PANTHER LIM DOMAIN-CONTAINING PROTEIN PLIM2C 1 196 - -
Cma06g01093 203 PANTHER OS06G0237300 PROTEIN 1 196 IPR045268 GO:0051015
Cma06g01093 203 SMART lim_4 102 154 IPR001781 -
Cma06g01093 203 SMART lim_4 9 61 IPR001781 -
Cma06g01093 203 Gene3D Cysteine Rich Protein 97 167 - -
Cma06g01093 203 Gene3D Cysteine Rich Protein 6 74 - -
Cma06g01093 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 168 - -
Cma06g01093 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Cma06g01093 203 MobiDBLite consensus disorder prediction 180 195 - -
Cma06g01093 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 95 128 - -
Cma06g01093 203 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cma06g01093 203 MobiDBLite consensus disorder prediction 177 203 - -
Cma06g01093 203 ProSiteProfiles LIM domain profile. 101 161 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01093 - - K09377 csv:101204422 355.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01093 Cma-Chr6:7377007 Cma14g02022 Cma-Chr14:14121121 1.06E-21 dispersed
Cma06g01093 Cma-Chr6:7377007 Cma06g01097 Cma-Chr6:7408006 4.07E-110 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g362 . . . . . . . . Cmo06g01119 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0769 . . . . . . . . . . . . . . . . Cma06g01093 . Car06g00928 . Cpe08g00525 . . . . . . . . . . . . . . . . . . .
Vvi15g927 . . . . . . . . . . Cma06g01093 . Car06g00928 . . Cpe08g00525 Cpe03g01718 Bhi01g00390 . . . . . . Cla05g00184 Cam05g0199 Cec05g0198 Cco05g0207 Clacu05g0196 Cmu05g0188 Cre05g0249 Cone14ag0344 . . Cone18ag1093 Lsi05g02023 . . Cme06g00196 . Blo16g00597 Bda11g00261 . Bpe13g00938 . Bma02g01137 Bma06g01206 . Cmo06g01119 Cmo14g02084 . . . . . . . . . . . . . . . . . . . . . Csa03g00907 Chy06g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002330 3 2 2 2 2 1 3 2 2 1 1 1 2 2 2 4 2 2 4 1 2 2 2 1 1 2 2 6 2 0 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35249 PF00412 LIM 1.70E-10 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01093 Cma_Chr06 FPKM 0.208504 0.0 0.0 0.075142 0.247857 0.0 0.275577 0.121588 0.124519 0.065341
Cma06g01093 Cma_Chr00 FPKM 0.331154 0.0 0.0 0.119344 0.344807 0.0 0.352024 0.154217 0.164805 0.103777
Cma06g01093 Cma_Chr00 FPKM 0.208504 0.0 0.0 0.075142 0.247856 0.0 0.275577 0.121588 0.124519 0.065341