Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01094 ATGGATTTATCTTGTAATATTTGGAAGCAAAATGTGTTATCTGGTAGTGAAAAAGCATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCTATGTGCTTAGAAGTAGAATTATTGATGCCAAGTTGACTGGAGGTTCAAGGGTAATTTATAAAGTGTCGAAGAAAAGAAACAGAATTGTAGCTGCGAGCAATTCCAATCATTTGAGTCTGGTTTGTGCTAGCAAGTATGATGGTGCCTTGCAAATTTGTAAGCACAAAAGATTCTTGAATTGTAACAAAACATTTGGAAGAAGGATGGGCATGGTTTATTCAGAGTGTCAAAGCAATGATTCTTTATCATTTATTGATGGAAATGGCAGAAATTTGGAATATGTGGGTACTGGTGATGGAGGATCCAGTTCTGAGCATACTGATGGTTTAGGGTCAGCTGGTTCCAGAGAAGCTGGTGGAGAAGCAGGAGCTGTAGAAACGGATGCACTGACTGTGGATGAGCTTAGAGAATTGCTGCAAAAGGCTATGACAGAATTGGAAGTTGCGAGACTTAACAGTACCATGTTTGAGGAAAAAGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCGGCCAATGCTTGGAATGATGTGAACTCTGCTCTTGATTCTGTACAACAGACAGTGAATGAAGAATATGCTGCCAAAGAATCTGTTCAAAAAGCAACCATGGCACTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACGATTCTCCTGAAACATCAACAGAAAGTGAGGGGGAGATTGATGGCAAGGAAAATCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCTGTGTTAATTTGGAAACTTGTGATGCGGAATTGAAGCGCTTACAGAGTAAAAAGGAGGAGTTACAGAAGGAAGTGGACAGGCTGACTGAGTTAGCTGAAAAAGAACAATTGATTGCGTTGAAAGCTGAAGAAGAAGTGTCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTGGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGTTTTACAGAGAGTGGAGAAATCTATATCAAATTCTTTTGTTGACACTTCGGAAACCACACAGGGGTCAAATATTATTGAAGAAGTTGCTAACGAGGACAATAAGGCAGTTCTCGAAATTTCTGGTGATATTGCTGTTGAAATGGATAGAGATTTGCCACTTATTGGTGATTCCTTAGTTATCAAATCTCTTCCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCGTATGACTTAAGTGATAGTGAGAATGGAAAATTGAATTTAGATTCCTTAAAGGAGGTAGAATCTGGAGCAGAGAAGTCTATTTTGAGTCCAGCAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCATCTTTAAATTCCCCCAAGGCTTTATTGAAAAAATCTTCTCGCTTTTTCTCAGCATCATTCTTTTCCTTTTCGGCTGATGGGGAAGAGTTCACTCCAGCATTTGTCTTCCAGGGTCTCCTGGATTCCACGAAAAAGCAATTGCCAAAGCTTATTGTTGGAGTAGTACTGTTAGGAGCAGGGATCAGTATCTTTGCAAATCGAGCAGAAAGGAATTCTCATATGTTTCAAAAGCCTGATGTTGTCACCACTAGCACTGATGAAGTTTCCTGGAATACAAGACCTTTATTTCAACAATTAAGTAAACTTCCTCAAAAAGTGAAAAAGTTAATTTCAAAGATTCCGCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGAATTTTAATTGGGCCATATGGTTTCTCCATAATCCGTCATGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTGGTGGTTGGCTTGATTGCTCATATTGTCTGTGGGCAGCCTGGCCCAGCTGCAATTGTCATTGGAAATGGTTTAGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCGCGGCATGGGCGAGCCACATTTTCTGTCTTACTATTCCAGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTTAAGGCAATAGTTGCCATTTCTACCATTATAGCTGGTGGGCGCCTGCTACTACGACCAATATATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACATTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTAGGTGCCTTTCTAGCAGGTTTACTACTTGCAGAAACGGAATTCTCCTTGCAGGTCGAATCTGATATTGCTCCCTATCGTGGCCTTCTATTGGGTCTCTTTTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGGCTTCTAATTGGTGGTAAGACTATATTGGTTGCCTTGATTGGTAGACTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCATTCGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTACTGTTTCTTGTTGTGGGAATTTCTATGGCCCTTACGCCGTGGCTAGCTGCTGGTGGTCAGTTAATTGCTTCTCATTTTGAGCAACATGATGTTCGGAGCTTATTACCTGTTGAAAGCGAGATAATAGCCCAGCTTCTATCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGCGAAGCGATAGAGTGGCTGTTGGACGTGCCCTGGACCTTCCCGTGTATTTTGGAGATGCTGGGAGTCGAGAAGTTCTTCATAAAATTGGTGCTGAAAGGGCATGTGCTGCTGCAATTACACTGGATTCACCGGGTGCAAATTACAGAACCGTTTGGGCTCTAAACAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCATGGCCTTAATTTGGAGAAGGCTGGGGCAACTGCGGTGGTTCCTGAGACGTTGGAACCAAGCTTACAGTTGGCTGCTGCCGTTCTTGCTCAGGCTAAACTACCCATGTCGGAGATTGCTGCAACGATCAACGAGTTTAGATCCCGACATTTATCCGAGCTTACCGAGCTATCTGAAGCCAGTGGAAGTTCACTTGGGTACGGGTTTTCTCGAATCATGAGTAAACCGAAAATTCAAACCTCTGATCCTTCAGATGAGAACCAAGTCCCCGAAGGAACACTCGCAATATGA 3528 42.55 MDLSCNIWKQNVLSGSEKAYCKTLDQFGPSYVLRSRIIDAKLTGGSRVIYKVSKKRNRIVAASNSNHLSLVCASKYDGALQICKHKRFLNCNKTFGRRMGMVYSECQSNDSLSFIDGNGRNLEYVGTGDGGSSSEHTDGLGSAGSREAGGEAGAVETDALTVDELRELLQKAMTELEVARLNSTMFEEKAQKISEAAIALQDEAANAWNDVNSALDSVQQTVNEEYAAKESVQKATMALSLAEARLQVAIESLELAKGGNDSPETSTESEGEIDGKENQEVLLVAQEDIKECCVNLETCDAELKRLQSKKEELQKEVDRLTELAEKEQLIALKAEEEVSNIMLLAEQAVALELEAAQRVSDAEIVLQRVEKSISNSFVDTSETTQGSNIIEEVANEDNKAVLEISGDIAVEMDRDLPLIGDSLVIKSLPGSFSDSEDSDQPYDLSDSENGKLNLDSLKEVESGAEKSILSPAKKQETQKDLTREGSSLNSPKALLKKSSRFFSASFFSFSADGEEFTPAFVFQGLLDSTKKQLPKLIVGVVLLGAGISIFANRAERNSHMFQKPDVVTTSTDEVSWNTRPLFQQLSKLPQKVKKLISKIPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGFSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLIAHIVCGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQIGFQAIAEALGLAAVKAIVAISTIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALIGRLFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASHFEQHDVRSLLPVESEIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDSPGANYRTVWALNKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELSEASGSSLGYGFSRIMSKPKIQTSDPSDENQVPEGTLAI 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7379830 7393978 + CmaCh06G010940.1 Cma06g01094 296648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01094 1175 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1175 - -
Cma06g01094 1175 Pfam Sodium/hydrogen exchanger family 617 965 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma06g01094 1175 Coils Coil 162 182 - -
Cma06g01094 1175 MobiDBLite consensus disorder prediction 462 488 - -
Cma06g01094 1175 ProSiteProfiles RCK N-terminal domain profile. 979 1101 IPR003148 GO:0006813
Cma06g01094 1175 Coils Coil 296 337 - -
Cma06g01094 1175 MobiDBLite consensus disorder prediction 430 449 - -
Cma06g01094 1175 MobiDBLite consensus disorder prediction 1155 1175 - -
Cma06g01094 1175 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1175 - -
Cma06g01094 1175 Gene3D - 989 1139 - -
Cma06g01094 1175 Gene3D - 607 972 IPR038770 -
Cma06g01094 1175 MobiDBLite consensus disorder prediction 255 275 - -
Cma06g01094 1175 Pfam TrkA-N domain 992 1093 IPR003148 GO:0006813
Cma06g01094 1175 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 618 876 IPR004771 GO:0006812|GO:0008324|GO:0016021
Cma06g01094 1175 MobiDBLite consensus disorder prediction 125 156 - -
Cma06g01094 1175 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 991 1118 IPR036291 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01094 Cma14g02022 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01094 Cma-Chr6:7379830 Cma14g02022 Cma-Chr14:14121121 0 dispersed
Cma06g01094 Cma-Chr6:7379830 Cma11g01680 Cma-Chr11:11055183 3.89E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01094 - - cmo:103483290 1866.28