Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01116 ATGGAGCACCTGCTTCCTTCCATGCATTTGCTAAGGCCCTTTACGTTTCGGCTTCATCCAAACACAATCTTATCTCCGGTAACCACCACACTCCGAACAATGGTGAGAGGAAAAACTCAGATGCGGCGGATCGAAAACGCCACGAATCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTTAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCACACAAGGGTAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATCAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGATTCAAAGAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTACAAAGCAGCTTAGCCCATGTTCGCGCTACAAAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGTATTTGGTTCAACTCGAGCCTCGTCAATCACTGACTCAAGTACGAGAAGTTTCACCGTATCTCGAAACCAGCTCGACTTTCGACGTTGAAACGGATTTGTTCATCGGGCCACCAAAGCCGAGATCGAAGTGA 738 45.66 MEHLLPSMHLLRPFTFRLHPNTILSPVTTTLRTMVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASSSMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSSYEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSLTQVREVSPYLETSSTFDVETDLFIGPPKPRSK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7524448 7530761 + CmaCh06G011160.1 Cma06g01116 296670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01116 245 PANTHER MADS BOX PROTEIN 34 241 - -
Cma06g01116 245 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 Gene3D - 46 127 IPR036879 GO:0003677|GO:0046983
Cma06g01116 245 SUPERFAMILY SRF-like 36 110 IPR036879 GO:0003677|GO:0046983
Cma06g01116 245 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 PANTHER MADS-BOX PROTEIN SOC1 34 241 - -
Cma06g01116 245 Coils Coil 175 202 - -
Cma06g01116 245 Pfam K-box region 121 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma06g01116 245 ProSiteProfiles K-box domain profile. 119 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma06g01116 245 Coils Coil 119 146 - -
Cma06g01116 245 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Cma06g01116 245 CDD MADS_MEF2_like 36 110 IPR033896 GO:0000977|GO:0045944
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01116 Cma15g01186 CCT
Cma02g01494 Cma06g01116 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01116 Cma-Chr6:7524448 Cma15g01396 Cma-Chr15:8798660 5.81E-53 dispersed
Cma08g00943 Cma-Chr8:5878385 Cma06g01116 Cma-Chr6:7524448 1.83E-25 transposed
Cma14g01999 Cma-Chr14:14020249 Cma06g01116 Cma-Chr6:7524448 5.50E-81 wgd
Cma15g01186 Cma-Chr15:7507315 Cma06g01116 Cma-Chr6:7524448 3.65E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35251 PF01486 K-box 1.50E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01116 - - csv:101209501 285.034