Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01120 ATGGCGGTCGAAAGGCAACCCAACGAGCTTCCTCAGGTTTTGGTTCTAAGTCCTCCCGCAATTTTCACATCTCTGGAATCCCAATTCTCAATCAGATTTCATATGCTAAAACCATGGGATTCCAAACTCCCATTACTCCAATTTCTCACCTCGTATGCCCAATCCGTCCCAGCCATGCTCGTTGTTCCAGGTGACCGTCTTCTAGTAAACTCCGCCATTCTCGACTGCCTCCCGTCGCTGAAGCTCGTCGTCACTACCAGCGCCGGTGTTGATCACTTGGATGTGGCGGAGCTACGGCGGCGTCGGGTGGCCATTGCCTATGCAGGAAACTTGTTTTCTCAAGATGTCGCTGACATGGCGGTGGGATTACTAATCGACGTTCTGAGGAATGTGTCGGCAGGAGATCGGTTCGTGAGGCAAGGGCTTTGGCCTACGCAAGGGGATTTCCCTCTCGCATTAAAGTTAAGCGGCAAGCAAATTGGGATAGTTGGATTGGGGAAAATAGGCACAGAAGTAGCCAAACGGCTAGAAGGTTTCGGCTGCAAAATCTCATACAATTCAAGAACCAAAAAGCCAACACTTCCATACCCCTTCTATTCCGATCTCCATGAACTTGCAGCCAACTGTGAAGCCCTCATCATTTGCTGTGGGTTAACGGCCGAAACCCGCCATATGATCGACAGGGACGTGATGGTTGCGTTAGGCAGAGATGGAGTGATAGTCAACATCGGCCGAGGGGCGATCGTCGACGAGACAGAACTGGTTCGACGCTTGATTCAAGGGGAGCTTGGGGGAGCTGGGCTGGATGTGTTTGAGAATGAACCTGAAGTTCCTAAAGAGCTGTTTAATCTTGATAATGTAGTGTTGTCGCCACATGTTGCTGTCTTAACAACTGAATCTATGGTGGGATTGACTCAATTGGCGTTGGGGAACTTGGAGGCATTCTTCTCAAACAAACCTTTGGTGTCTCCGTATGTGGATTAG 984 49.9 MAVERQPNELPQVLVLSPPAIFTSLESQFSIRFHMLKPWDSKLPLLQFLTSYAQSVPAMLVVPGDRLLVNSAILDCLPSLKLVVTTSAGVDHLDVAELRRRRVAIAYAGNLFSQDVADMAVGLLIDVLRNVSAGDRFVRQGLWPTQGDFPLALKLSGKQIGIVGLGKIGTEVAKRLEGFGCKISYNSRTKKPTLPYPFYSDLHELAANCEALIICCGLTAETRHMIDRDVMVALGRDGVIVNIGRGAIVDETELVRRLIQGELGGAGLDVFENEPEVPKELFNLDNVVLSPHVAVLTTESMVGLTQLALGNLEAFFSNKPLVSPYVD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7542308 7544123 - CmaCh06G011200.1 Cma06g01120 296674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01120 327 Gene3D - 28 320 - -
Cma06g01120 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 113 294 IPR036291 -
Cma06g01120 327 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 294 IPR006140 GO:0051287
Cma06g01120 327 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 8 324 - -
Cma06g01120 327 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 54 321 IPR006139 GO:0016616|GO:0051287
Cma06g01120 327 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 47 149 - -
Cma06g01120 327 Gene3D - 113 297 - -
Cma06g01120 327 CDD HPPR 11 317 - -
Cma06g01120 327 PANTHER D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN-RELATED 8 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01120 - - K15919 csv:101215727 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01120 Cma-Chr6:7542308 Cma17g00795 Cma-Chr17:6305071 2.19E-96 dispersed
Cma14g01998 Cma-Chr14:14017513 Cma06g01120 Cma-Chr6:7542308 7.32E-13 dispersed
Cma06g01114 Cma-Chr6:7510775 Cma06g01120 Cma-Chr6:7542308 0 proximal
Cma14g01996 Cma-Chr14:14014896 Cma06g01120 Cma-Chr6:7542308 1.80E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g431 . . . . . . . Bma14g00574 Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00695 . . . . . Cma06g01120 . . . Cpe08g00498 . . . . . . . . . . . . . . . . . . .
Vvi15g510 Blo01g00138 . . Bda08g00224 . Bpe05g00916 . Bma05g01119 . . Cma06g01120 . Car06g00956 . . Cpe08g00498 . Bhi01g00300 . . . . . Lcy11g1918 Cla05g00207 Cam05g0224 Cec05g0227 Cco05g0233 Clacu05g0222 Cmu05g0214 Cre05g0275 . . . . Lsi05g01985 . . Cme06g00223 . . . . . . . Bma06g01231 . Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . Csa03g00943 Chy06g00219 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01120 Cma_Chr06 FPKM 1.882947 2.083032 1.57465 1.907088 6.451326 5.672053 5.06499 3.666173 3.463836 3.233805