Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01129 ATGGCTTCGAATGGTGCTTATCGGAATAGCGGCTCTCACAGAGGTTCTTTCAAGGTGGATCGGCCGCCTCATGCTGCTTCTAACCTCAGGACTTCGTCGTTTAAGGCTAGGCCCTCTATTCGTCGGTCTACTTCTGCGTCTTTTGGTTCAAATGCGAATAAGGATGCTGATGGAGTGCCAGGAAGAGTTCGAGTGGCTGTGAGATTGCGACCCCGAAATGCAGAAGAGCGGTTGGCAGATGCAGATTTTGCTGATTGTGTGGAACTGCAGCCAGAGCTTAAAAGATTGAAACTTAGAAAAAACAATTGGGATTCTGATACATATGAGTTTGATGAGGTGCTTACTGAATCTGCATCACAGAAGCGTGTGTATGAAGTGGTTGCAAAACCAGTGGTGGAGAGTGTTCTAGATGGTTATAATGGGACCGTGATGGCTTATGGCCAAACTGGTACGGGGAAGACATTTACGCTTGGACGATTAGGGGATGAAGATACATCTGATCGTGGCATTATGGTCCGTGCAATGGAGGATATTTTAGCTGATGTATCACCTGAAACAGATTCAATTTCAGTGTCTTACCTACAGCTCTATATGGAGACTCTACAAGACTTGCTTGATCCAGCAAATGACAATATTCCGTTTGTGGAAGATCCAAAAACTGGTGATGTTTCCGTACCTGGGGCAACTGTAGTGGAAATCAGGAACCAAAGCAGTTTTCTAGAGTTACTACGTGTGGGGGAGGCCCATCGGGTTGCTGCCAATACAAAGTTGAATACAGAGTCTTCTCGTAGCCATGCAATTCTGATGGTACATGTTAAAAGATCTGTTGTAAGGGAAGAGGTTCTGTCAAATGAAGAGGGTGAACCTTCAGAGTTAGGTAGACCATTCAGGCCACTTATTCGAAAGAGCAAGCTGGTCGTAGTGGATTTGGCAGGATCGGAGCGTATTCACAAGTCAGGGAGTGAGGGGCATCTGTTGGAGGAAGCTAAGTATATTAATCTATCACTTAGTGCTCTAGGAAAATGCATAAATGCTTTGGCAGAAAATAGTGCTCATGTTCCAATACGAGATTCCAAACTTACGAGATTGCTCAGAGATTCATTTGGAGGTTCAGCAAGAACTTCTTTGATTGTGACAATTGGTCCATCTCCACGCCATCGAGGAGAGACTTCCAGTACCATTCTGTTCGGCCAAAGGGCTATGAAGGTGGAGAATATGTTGAAAATAAAAGAAGAATTTGATTATAAAAGTTTGTCCAGGAAGCTTGAAGTACAGCTGGACAAACTGATTGCTGAAAATGAAAGACAACAGAAAGCTTTTGAAGATGAATTGGAAAAGATACATCTAGAAGCACAAAACCGCATATCTGAGGCTGAGAGAAATTTTGCTGATGCGTTGGAGAAGGAAAGTAAAAAATGCCAGCTGGATTATATGGAAACTGTCAAGAAATTGGAAGAGAAGTTGGTCTTGAACCAGCCAAAGATTGATCATGATGATTCTGTCCGTGACAAACGGAGTGGACAGGGGGGCTGTTTTTCTGCTGCTGAAGAAGTTGAAGTCAAAAAGTTGCTGGAAAATGAAGCAAATCTGAGAAAGGCAGCTGAAGAGGAGGTCAGCAGGCTTAGACATCAGCTAGAGCTATACAGGCAGCCAAATGTAGGTGATGAACCTGATACTGTAAAACTCACTAAATTAATGGAGGAGGAGGCTCTTCAGAAAAAGAAAATTGAAGAAGAAGTAATAATATTACGAAGCCAATTGTTGCAACTGACCCTCGAAGCTGAGCAGATGAGAAGGTGTCTTGATAGGGGTGGAGCTGAAAACGGATTTTCTGCTTATGATGCTTCTATGTCTCCATTTAGACATTCTCAACTCAAAGAAACAAAGAGCGGACACAAGCCATCAGTTGCCACTCTCTTTGAACAAGTTGGTTTGCAAAAAATCTTGTCCTTGCTGGACTCGGAAGATGCCAATGTACGAATTCATGCTGTTAAAGTATTAGCCAATCTTGCTGCTGAAGAGTCAAATCAAAAAAGGATCGTTGAGTCTGGTGGTCTTATTTCATTACTGATGCTTCTTAGAAGCTATGAGGATGAAACGGTTAGAAGAGTAGCAGCCGGTGCAATTGCCAACCTTGCTATGAATGAAGCCAATCAAGAACGAATAATGGCTGAAGGGGGAATCAGTCTACTGTCATTGACTGCCAATGCTGCTGAGGACCCACAGACTCTGCGCATGGTTGCTGGAGCCATTGCTAATTTATGTGGCAATGAAAAACTGCAGATGAAACTGAGATCTGAAGGTGGTTTAAAAGCCTTGCTGGGAATGGTGCGATGTGGACATCCAGATGTTCTTTCTCAGGTTGCTCGTGGGGTAGCAAACTTTGCGAAATGCGAATCTCGAGCAGCTAGTCACGGGACGAACAGCGGCAGATCTCTTTTGATAGAAGATGGAGGTCTCCCTTGGATCATACAAAATGCAAACAATGAAGTGGCACCAATCCGTCGCCATATCGAGCTTGCGTTATGCCATTTAGCACAACATGAAGTAAATGCAAAGGAGATGATTAGTGGAGGTGCACTTTGGGAGTTAATTCGCATATCGCGCGACTGTTCCAGAGAGGATATACGGAATCTTGCTCGTCGAACACTGACTTCCAGTCCCGTCTTTCGATCTGAAATGAGAAGGCTGAGAATTGAATGCTAA 2706 43.87 MASNGAYRNSGSHRGSFKVDRPPHAASNLRTSSFKARPSIRRSTSASFGSNANKDADGVPGRVRVAVRLRPRNAEERLADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSDRGIMVRAMEDILADVSPETDSISVSYLQLYMETLQDLLDPANDNIPFVEDPKTGDVSVPGATVVEIRNQSSFLELLRVGEAHRVAANTKLNTESSRSHAILMVHVKRSVVREEVLSNEEGEPSELGRPFRPLIRKSKLVVVDLAGSERIHKSGSEGHLLEEAKYINLSLSALGKCINALAENSAHVPIRDSKLTRLLRDSFGGSARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDELEKIHLEAQNRISEAERNFADALEKESKKCQLDYMETVKKLEEKLVLNQPKIDHDDSVRDKRSGQGGCFSAAEEVEVKKLLENEANLRKAAEEEVSRLRHQLELYRQPNVGDEPDTVKLTKLMEEEALQKKKIEEEVIILRSQLLQLTLEAEQMRRCLDRGGAENGFSAYDASMSPFRHSQLKETKSGHKPSVATLFEQVGLQKILSLLDSEDANVRIHAVKVLANLAAEESNQKRIVESGGLISLLMLLRSYEDETVRRVAAGAIANLAMNEANQERIMAEGGISLLSLTANAAEDPQTLRMVAGAIANLCGNEKLQMKLRSEGGLKALLGMVRCGHPDVLSQVARGVANFAKCESRAASHGTNSGRSLLIEDGGLPWIIQNANNEVAPIRRHIELALCHLAQHEVNAKEMISGGALWELIRISRDCSREDIRNLARRTLTSSPVFRSEMRRLRIEC 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7594601 7605527 + CmaCh06G011290.1 Cma06g01129 296683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01129 901 MobiDBLite consensus disorder prediction 1 57 - -
Cma06g01129 901 Pfam Kinesin motor domain 68 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 Coils Coil 524 544 - -
Cma06g01129 901 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 643 685 IPR000225 GO:0005515
Cma06g01129 901 Gene3D - 734 896 IPR011989 -
Cma06g01129 901 Gene3D - 628 733 IPR011989 -
Cma06g01129 901 Pfam Armadillo/beta-catenin-like repeat 676 713 IPR000225 GO:0005515
Cma06g01129 901 ProSitePatterns Kinesin motor domain signature. 303 314 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma06g01129 901 PANTHER KINESIN-LIKE PROTEIN KIN-UB 44 893 - -
Cma06g01129 901 ProSiteProfiles Kinesin motor domain profile. 62 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 Coils Coil 894 901 - -
Cma06g01129 901 MobiDBLite consensus disorder prediction 26 52 - -
Cma06g01129 901 SUPERFAMILY ARM repeat 632 884 IPR016024 -
Cma06g01129 901 PRINTS Kinesin heavy chain signature 138 159 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 PRINTS Kinesin heavy chain signature 304 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 PRINTS Kinesin heavy chain signature 353 374 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 CDD KISc 62 401 - -
Cma06g01129 901 Gene3D Kinesin motor domain 54 433 IPR036961 -
Cma06g01129 901 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 727 IPR000225 GO:0005515
Cma06g01129 901 SMART arm_5 715 756 IPR000225 GO:0005515
Cma06g01129 901 SMART arm_5 673 714 IPR000225 GO:0005515
Cma06g01129 901 SMART arm_5 632 672 IPR000225 GO:0005515
Cma06g01129 901 SMART arm_5 757 797 IPR000225 GO:0005515
Cma06g01129 901 PANTHER KINESIN-RELATED 44 893 IPR027640 GO:0003777|GO:0007018
Cma06g01129 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 438 IPR027417 -
Cma06g01129 901 Coils Coil 419 468 - -
Cma06g01129 901 SMART kinesin_4 60 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g01129 901 Coils Coil 566 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01129 K10396 KIF5; kinesin family member 5 - csv:101212194 1616.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02556 Cma-Chr4:17531740 Cma06g01129 Cma-Chr6:7594601 0 dispersed
Cma06g01129 Cma-Chr6:7594601 Cma15g00507 Cma-Chr15:2314135 6.52E-99 dispersed
Cma14g01984 Cma-Chr14:13939565 Cma06g01129 Cma-Chr6:7594601 0 wgd
Cma15g01176 Cma-Chr15:7445105 Cma06g01129 Cma-Chr6:7594601 0 wgd
Cma02g01514 Cma-Chr2:8633534 Cma06g01129 Cma-Chr6:7594601 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g461 . . . . . Bpe07g00141 . . Cmo06g01154 . . . . . . . Cpe05g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00119 . . . Cma06g01129 . Car06g00965 . Cpe08g00491 . Bhi12g00356 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01129 Cma_Chr06 FPKM 3.56155 3.513845 3.416634 3.845837 7.607405 7.451647 6.89505 5.003081 5.495576 5.076349