Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01130 ATGGATCGACCCGCCGCCGCTCCCGGCCGTCATCTTCCGCCGCCGTTCATTTCAAGAGACCTTCAACTCAATCCCCACCACCATTTCCTCCACCAAAACCCCGACCAACACAACGGAAATGATATCTCTGACGGCGGAGTCGCCGTGGAGCTTAAGGAGTTAAGCGGCGGCGAGGGCTCGAGACGGCCACGAGGACGCCCGGCTGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGCGATAGCGCTAATGCACTACGGTGCCACGTCATTGAAATCGCCAACGCCAACGACGTGATCGAAACCCTAATGATTTTCGCACATCAGCGCCAACGTGGCATTTGCATTCTGACCGGCGCCGGAGCGGTCACTAACGTCACACTCAAACAACCGGCTGCCTCCGCCACCGGTACGGTGATCGCTCTGCCGGGGAGATTTGAGATTCTTTCGCTGTCGGGGTCGTTTCTGCCGCCGCCGGCGCCACCAGTAGCGTCCAGGCTGACCGTGTATTTATCGGGCAGACAGGGGCAGGTTATAGGAGGAAGCGTGGTGGGACCACTTTTGAGTTCGGGACCGGTGGTGATTACTGCGGCTTCGTTTGGAAACGCGGCGTACGAGAGGCTGCCGTTGGAGGACGATGAAATGGCGGTGGAGACAGCGGCGGAGGCTGGAAGTAGTCCGGTTAAGTCGCCGGGAACTGCCGTGCAACAGCCACAATTTTCGCCGGAAATTCATGGAATGGCGCCAAATCTAATGAATACCTGTCAATTGCCGACGGCGCCCTACTGGGGCACAGGTCGTACTCCGCCATTTTAG 822 58.52 MDRPAAAPGRHLPPPFISRDLQLNPHHHFLHQNPDQHNGNDISDGGVAVELKELSGGEGSRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLMIFAHQRQRGICILTGAGAVTNVTLKQPAASATGTVIALPGRFEILSLSGSFLPPPAPPVASRLTVYLSGRQGQVIGGSVVGPLLSSGPVVITAASFGNAAYERLPLEDDEMAVETAAEAGSSPVKSPGTAVQQPQFSPEIHGMAPNLMNTCQLPTAPYWGTGRTPPF 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7608057 7608878 - CmaCh06G011300.1 Cma06g01130 296684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01130 273 CDD DUF296 89 202 IPR005175 -
Cma06g01130 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 7 273 - -
Cma06g01130 273 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Cma06g01130 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 218 - -
Cma06g01130 273 MobiDBLite consensus disorder prediction 1 21 - -
Cma06g01130 273 MobiDBLite consensus disorder prediction 54 78 - -
Cma06g01130 273 Gene3D - 88 224 - -
Cma06g01130 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 203 IPR005175 -
Cma06g01130 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 273 IPR014476 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01130 Cma15g01175 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02941 Cma-Chr4:19395948 Cma06g01130 Cma-Chr6:7608057 3.07E-50 dispersed
Cma06g01130 Cma-Chr6:7608057 Cma17g00057 Cma-Chr17:253494 4.83E-63 dispersed
Cma12g00196 Cma-Chr12:911548 Cma06g01130 Cma-Chr6:7608057 6.38E-48 dispersed
Cma17g00175 Cma-Chr17:904430 Cma06g01130 Cma-Chr6:7608057 5.75E-63 dispersed
Cma09g00020 Cma-Chr9:119736 Cma06g01130 Cma-Chr6:7608057 6.00E-66 transposed
Cma15g01175 Cma-Chr15:7443541 Cma06g01130 Cma-Chr6:7608057 8.55E-87 wgd
Cma17g00027 Cma-Chr17:116958 Cma06g01130 Cma-Chr6:7608057 4.83E-88 wgd
Cma02g01513 Cma-Chr2:8630962 Cma06g01130 Cma-Chr6:7608057 9.67E-90 wgd
Cma06g01130 Cma-Chr6:7608057 Cma08g00950 Cma-Chr8:5922784 1.08E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01130 - - bhj:120093013 417.157