Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01133 ATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCCACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGAAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCGGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGGCCAATTGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAGCTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCATGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACAGTCTGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTCGATAGAGAGCGAGACGATTGGGGTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCAAGAAATACCGTCCTTCAATTCCATTCCATTTTTCTTGAGGGAAAAGACACCGTGGGATCTAAAGAAAAGAAGCGAGCAAGTTTTTGCTTTGGCTTTGGCTTTGGCTTTGGCTTTGTTGAGTTCCTCTTCTCTCAGACGCCTTCGCTTTTCTCTGACCTCTTCGCCATGACGAAGCAGCAAGCCAACTGGTCTCCCTACGACAACAATGGCGGATCGTGTGTTGCGATTGCCGGCGCCGATTACTGTGTAATCGCCGCTGATACTCGGTTGTCTACGGGTTACAATATCCTCACTCGCGATTACTCCAAAATTTGTAAGCTGGCCGACAAAGCTGTGATGGCTTCCTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAGGTTTTGTCTGCTAGGCATTTGACCTACCAACATCAGCACAACAAGCAAATGAGCTGCCCGGCGATGGCTCAACTGCTCTCAAATACATTGTACTTCAAACGTTTCTTTCCTTATTATGCTTTTAATGTCTTGGGCGGACTTGATAATGAAGGAAAGGGTTGTGTGTTCACCTATGATGCTGTTGGTTCTTATGAGAGAGTTGGATACAGCGCTCAGGGTTCGGGTTCCACCCTTATTACACCCTTTTTAGATAACCAACTGAAGTCTCCCAGCCCTCTATTATTGCCTGCGCAGGATTCTGCAACGCCTCTTTCAGAAGCCGAAGCTATTGACCTGGTGAAAACTGTTTTTGCATCTGCTACTGAGAGAGATATCTACACTGGTGACAAACTCGAAATCGTCATTCTTAATGCCGACGGTATTCGACGTGAATACTTAGACCTCCGAAAAGATTAG 1833 49.54 MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASGTTGKKKRGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQNKKMGMQYIGQLNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLIAASPIQVVVGSFVPTSQPDPKVKKPKPELLLAAAPVAAAPSTTPATTMPTSSNADTDDGLNGNSLQTPESQKPTTFPPASFDRERDDWGANTAVHSLQEPRNTVLQFHSIFLEGKDTVGSKEKKRASFCFGFGFGFGFVEFLFSQTPSLFSDLFAMTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMASSGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAEAIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7636265 7645459 + CmaCh06G011330.1 Cma06g01133 296687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01133 610 CDD DUF296 131 244 IPR005175 -
Cma06g01133 610 ProSiteProfiles Proteasome beta-type subunit profile. 402 595 IPR023333 -
Cma06g01133 610 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 396 609 IPR029055 -
Cma06g01133 610 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Cma06g01133 610 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 320 - -
Cma06g01133 610 ProSiteProfiles PPC domain profile profile. 126 269 IPR005175 -
Cma06g01133 610 MobiDBLite consensus disorder prediction 272 309 - -
Cma06g01133 610 MobiDBLite consensus disorder prediction 18 107 - -
Cma06g01133 610 CDD proteasome_beta_type_1 395 610 - -
Cma06g01133 610 ProSitePatterns Proteasome beta-type subunits signature. 406 453 IPR016050 GO:0005839|GO:0051603
Cma06g01133 610 Gene3D - 131 258 - -
Cma06g01133 610 Pfam Proteasome subunit 400 594 IPR001353 GO:0005839|GO:0051603
Cma06g01133 610 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 251 - -
Cma06g01133 610 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 320 IPR039605 GO:0003680
Cma06g01133 610 MobiDBLite consensus disorder prediction 267 317 - -
Cma06g01133 610 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 395 610 IPR029055 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01133 Cma15g01173 CCT
Cma06g01133 Cma15g01173 ECH
Cma06g01133 Cma16g01035 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01007 Cma-Chr2:5983347 Cma06g01133 Cma-Chr6:7636265 3.18E-76 dispersed
Cma06g00747 Cma-Chr6:3781325 Cma06g01133 Cma-Chr6:7636265 5.95E-64 dispersed
Cma06g01133 Cma-Chr6:7636265 Cma14g01978 Cma-Chr14:13908339 5.26E-142 dispersed
Cma15g00663 Cma-Chr15:3157208 Cma06g01133 Cma-Chr6:7636265 1.59E-17 dispersed
Cma14g01977 Cma-Chr14:13899925 Cma06g01133 Cma-Chr6:7636265 4.28E-178 wgd
Cma15g01173 Cma-Chr15:7425014 Cma06g01133 Cma-Chr6:7636265 3.99E-89 wgd
Cma02g01510 Cma-Chr2:8610196 Cma06g01133 Cma-Chr6:7636265 7.98E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01133 K02732 - cpep:111801216 534.643