Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01135 ATGGAATTCGAAGCTCAGGCTCAGAGCTCGGACGGTTCGTCGACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCAGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAATCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAGGAGAGCAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTCAAGTATGTTCCTGTATTAGTAGATGGTGCTGTGGTAGTTTCAGATTCTTACGCGATTTTACTGTATTTGGAAGAGAAATATCCACAGAAGGCGTTGCTGCCTGCTGATCTTCATTTAAAATCTCTTAATCTGCAAGTGGCAAGTATTGTCAGCTCAAGCATACAGCCTCTTATTATGTTGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTACCATGGGCTCAGACTAATATAGAAAATGGTTTCAATGCTCTAGAGAAACTGCTGAAGAATTTTTCTGGCCGATATGCGCTGGGAGAAGAAGTATATATGGCTGATGTATTTTTGGCTCCCCAAGTTTCTGTTGCTTTTGGGAGGTTCAACATTGACACGTCCAAGTTCCCTGCTTTAGCAAGGATTTATGAATCTTACAAGATGTTACCAGAATTCCAAGCCTCGTCACCAGAAAGGCAGCCCGACGCCCTTCACTAG 687 44.1 MEFEAQAQSSDGSSTSSKLVLYSFWQSSCSWRVRFALNLKGLSYEYRAVNLGRGEQLSPDFERLNPLKYVPVLVDGAVVVSDSYAILLYLEEKYPQKALLPADLHLKSLNLQVASIVSSSIQPLIMLGLLKTIEEKFGPEEQLPWAQTNIENGFNALEKLLKNFSGRYALGEEVYMADVFLAPQVSVAFGRFNIDTSKFPALARIYESYKMLPEFQASSPERQPDALH 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7652425 7656514 + CmaCh06G011350.1 Cma06g01135 296689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01135 228 SFLD Main (cytGST) 19 208 - -
Cma06g01135 228 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 17 98 IPR004045 -
Cma06g01135 228 Pfam Glutathione S-transferase, N-terminal domain 21 97 IPR004045 -
Cma06g01135 228 Gene3D - 100 228 - -
Cma06g01135 228 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 103 228 IPR010987 -
Cma06g01135 228 Gene3D Glutaredoxin 21 97 - -
Cma06g01135 228 CDD GST_C_Zeta 104 223 IPR034330 -
Cma06g01135 228 Pfam Glutathione S-transferase, C-terminal domain 142 216 IPR004046 -
Cma06g01135 228 SUPERFAMILY GST C-terminal domain-like 99 226 IPR036282 -
Cma06g01135 228 SFLD Glutathione Transferase (cytosolic) 19 208 IPR040079 -
Cma06g01135 228 PANTHER MALEYLACETOACETATE ISOMERASE 9 227 - -
Cma06g01135 228 CDD GST_N_Zeta 19 91 IPR034333 -
Cma06g01135 228 SUPERFAMILY Thioredoxin-like 17 101 IPR036249 -
Cma06g01135 228 TIGRFAM maiA: maleylacetoacetate isomerase 21 226 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cma06g01135 228 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 9 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01135 K01800 maiA, GSTZ1; maleylacetoacetate isomerase [EC:5.2.1.2] - csv:101213403 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00641 Cma-Chr2:3887013 Cma06g01135 Cma-Chr6:7652425 1.32E-79 dispersed
Cma02g00643 Cma-Chr2:3895323 Cma06g01135 Cma-Chr6:7652425 1.84E-91 dispersed
Cma06g01135 Cma-Chr6:7652425 Cma03g00384 Cma-Chr3:4366133 1.57E-11 dispersed
Cma06g01135 Cma-Chr6:7652425 Cma06g01277 Cma-Chr6:8499592 2.42E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g01106 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.5e-65 244.6
Cma08g00409 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.2e-63 240.4
Cma08g00410 CST 5 210 Glutathione S-transferase Gene Family AT4G02520 56.5 1.8e-59 226.5
Cma17g01106 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.0e-66 249.6
Cma08g00409 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 4.2e-64 241.9
Cma08g00410 CST 5 211 Glutathione S-transferase Gene Family AT2G02930 57.1 1.4e-59 226.9
Cma08g00409 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.7 1.8e-61 233.4
Cma17g01106 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cma08g00410 CST 6 207 Glutathione S-transferase Gene Family AT1G02950 54.2 1.6e-57 220.3
Cma17g01106 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.3e-65 244.2
Cma08g00409 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.6 3.2e-64 242.3
Cma08g00410 CST 5 211 Glutathione S-transferase Gene Family AT1G02930 55.1 3.1e-59 225.7
Cma17g01106 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cma08g00409 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.6 8.4e-65 244.2
Cma08g00410 CST 5 211 Glutathione S-transferase Gene Family AT1G02920 56.5 1.3e-60 230.3
Cma08g00409 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.4 1.2e-68 257.3
Cma17g01106 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cma08g00410 CST 4 214 Glutathione S-transferase Gene Family AT2G47730 55.7 2.4e-61 233.0
Cma03g00384 . 3 211 Glutathione S-transferase Gene Family AT2G29450 50.2 4.8e-50 195.3
Cma04g00639 . 72 225 Glutathione S-transferase Gene Family AT2G29450 53.5 1.3e-39 160.6
Cma03g00383 . 3 217 Glutathione S-transferase Gene Family AT3G09270 52.3 1.4e-65 246.9
Cma03g00384 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 7.6e-64 241.1
Cma07g01029 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.4 9.6e-59 224.2
Cma04g00321 . 4 219 Glutathione S-transferase Gene Family AT1G69930 50.7 2.0e-59 226.5
Cma04g00321 . 1 216 Glutathione S-transferase Gene Family AT1G59670 51.1 1.6e-56 216.9
Cma04g00321 . 1 216 Glutathione S-transferase Gene Family AT1G59700 53.0 5.3e-60 228.4
Cma04g00321 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.5 2.2e-74 276.2
Cma04g00323 CCT 6 102 Glutathione S-transferase Gene Family AT1G10370 76.5 5.0e-39 158.7
Cma04g00321 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 3.8e-71 265.4
Cma04g00639 . 70 285 Glutathione S-transferase Gene Family AT1G78380 63.9 2.5e-83 305.8
Cma16g00465 . 1 214 Glutathione S-transferase Gene Family AT1G78380 66.8 4.2e-83 305.1
Cma04g00640 . 1 207 Glutathione S-transferase Gene Family AT1G78380 63.1 4.1e-78 288.5
Cma16g00464 . 1 197 Glutathione S-transferase Gene Family AT1G78380 62.1 5.5e-75 278.1
Cma04g02270 . 4 221 Glutathione S-transferase Gene Family AT1G78380 54.1 2.6e-64 242.7
Cma04g00641 . 633 810 Glutathione S-transferase Gene Family AT1G78380 61.8 1.1e-62 237.3
Cma04g00638 . 4 223 Glutathione S-transferase Gene Family AT1G78380 50.5 2.0e-61 233.0
Cma16g00465 . 7 214 Glutathione S-transferase Gene Family AT1G78370 63.9 4.0e-78 288.5
Cma04g00639 . 76 283 Glutathione S-transferase Gene Family AT1G78370 60.1 1.7e-73 273.1
Cma16g00464 . 1 197 Glutathione S-transferase Gene Family AT1G78370 58.9 2.1e-71 266.2
Cma04g00640 . 7 207 Glutathione S-transferase Gene Family AT1G78370 58.2 4.8e-71 265.0
Cma04g02270 . 7 219 Glutathione S-transferase Gene Family AT1G78370 51.6 4.5e-61 231.9
Cma04g00638 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.9 7.1e-59 224.6
Cma04g00641 . 648 810 Glutathione S-transferase Gene Family AT1G78370 60.7 8.7e-57 217.6
Cma04g00639 . 70 285 Glutathione S-transferase Gene Family AT1G78340 60.6 1.2e-77 287.0
Cma16g00465 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.6 4.5e-77 285.0
Cma04g00640 . 1 207 Glutathione S-transferase Gene Family AT1G78340 59.8 6.7e-73 271.2
Cma16g00464 . 1 197 Glutathione S-transferase Gene Family AT1G78340 60.3 1.3e-71 266.9
Cma04g02270 . 4 219 Glutathione S-transferase Gene Family AT1G78340 50.9 5.3e-62 235.0
Cma04g00641 . 648 810 Glutathione S-transferase Gene Family AT1G78340 60.7 1.8e-57 219.9
Cma16g00465 . 1 214 Glutathione S-transferase Gene Family AT1G78320 51.9 2.3e-56 216.1
Cma16g00465 . 1 219 Glutathione S-transferase Gene Family AT1G17180 66.2 5.3e-86 314.7
Cma04g00639 . 70 288 Glutathione S-transferase Gene Family AT1G17180 63.5 3.8e-84 308.5
Cma16g00464 . 1 202 Glutathione S-transferase Gene Family AT1G17180 64.8 1.8e-81 299.7
Cma04g00640 . 1 212 Glutathione S-transferase Gene Family AT1G17180 63.0 3.7e-79 292.0
Cma04g02270 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.3 2.5e-67 252.7
Cma04g00641 . 633 810 Glutathione S-transferase Gene Family AT1G17180 57.3 3.8e-60 228.8
Cma14g01961 CST 166 321 Glutathione S-transferase Gene Family AT1G17180 50.3 2.2e-39 159.8
Cma06g01155 CST 7 161 Glutathione S-transferase Gene Family AT1G17180 50.6 3.2e-38 156.0
Cma16g00465 . 3 217 Glutathione S-transferase Gene Family AT1G17190 57.2 2.8e-71 265.8
Cma04g00639 . 72 286 Glutathione S-transferase Gene Family AT1G17190 55.3 3.7e-71 265.4
Cma16g00464 . 3 200 Glutathione S-transferase Gene Family AT1G17190 54.4 2.7e-66 249.2
Cma04g00640 . 3 210 Glutathione S-transferase Gene Family AT1G17190 53.5 1.0e-65 247.3
Cma04g00641 . 648 810 Glutathione S-transferase Gene Family AT1G17190 54.0 1.0e-49 194.1
Cma04g00639 . 72 283 Glutathione S-transferase Gene Family AT3G43800 55.6 3.0e-68 255.8
Cma16g00465 . 3 216 Glutathione S-transferase Gene Family AT3G43800 53.2 7.4e-67 251.1
Cma04g00640 . 3 199 Glutathione S-transferase Gene Family AT3G43800 52.9 4.2e-62 235.3
Cma04g00641 . 648 810 Glutathione S-transferase Gene Family AT3G43800 50.9 1.0e-47 187.6
Cma04g00639 . 73 288 Glutathione S-transferase Gene Family AT1G53680 56.9 2.3e-68 256.1
Cma16g00465 . 4 219 Glutathione S-transferase Gene Family AT1G53680 55.5 1.5e-67 253.4
Cma04g00640 . 4 212 Glutathione S-transferase Gene Family AT1G53680 54.6 9.9e-64 240.7
Cma04g02270 . 3 224 Glutathione S-transferase Gene Family AT1G53680 53.1 6.4e-63 238.0
Cma16g00464 . 4 202 Glutathione S-transferase Gene Family AT1G53680 51.8 6.0e-61 231.5
Cma04g00638 . 4 220 Glutathione S-transferase Gene Family AT1G53680 53.4 3.9e-60 228.8
Cma04g00641 . 648 810 Glutathione S-transferase Gene Family AT1G53680 59.4 7.4e-51 198.0
Cma02g00643 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 1.5e-60 229.9
Cma02g00641 . 50 221 Glutathione S-transferase Gene Family AT2G02390 63.4 1.0e-56 217.2
Cma06g01135 . 60 226 Glutathione S-transferase Gene Family AT2G02390 52.7 1.5e-47 186.8
Cma02g00643 . 10 220 Glutathione S-transferase Gene Family AT2G02380 63.0 9.5e-75 277.3
Cma02g00641 . 9 219 Glutathione S-transferase Gene Family AT2G02380 58.8 3.3e-67 252.3
Cma06g01135 . 17 225 Glutathione S-transferase Gene Family AT2G02380 54.1 9.2e-62 234.2
Cma16g00590 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.4 9.4e-92 334.0
Cma04g00735 . 1 229 Glutathione S-transferase Gene Family AT5G41210 68.1 4.8e-88 321.6
Cma16g00590 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.2 2.0e-87 320.9
Cma04g00735 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.2 1.2e-84 311.6
Cma06g00341 . 10 236 Glutathione S-transferase Gene Family AT5G02780 69.3 4.2e-89 325.1
Cma06g00342 . 4 232 Glutathione S-transferase Gene Family AT5G02780 66.7 2.9e-82 302.4
Cma06g00341 . 5 237 Glutathione S-transferase Gene Family AT3G55040 61.8 1.2e-80 297.4
Cma06g00342 . 1 230 Glutathione S-transferase Gene Family AT3G55040 56.3 5.6e-75 278.5
Cma06g00341 . 10 236 Glutathione S-transferase Gene Family AT5G02790 70.0 9.6e-94 340.5
Cma06g00342 . 4 232 Glutathione S-transferase Gene Family AT5G02790 68.3 1.1e-89 327.0
Cma04g00237 . 205 415 Glutathione S-transferase Gene Family AT1G19570 67.5 2.2e-81 299.3
Cma04g01211 . 1 230 Glutathione S-transferase Gene Family AT1G19570 60.2 2.4e-75 279.3
Cma14g00821 . 66 273 Glutathione S-transferase Gene Family AT1G19570 61.7 7.0e-75 277.7
Cma04g00236 . 1 211 Glutathione S-transferase Gene Family AT1G19570 60.8 2.1e-71 266.2
Cma04g00237 . 205 416 Glutathione S-transferase Gene Family AT1G75270 72.3 7.2e-88 320.9
Cma04g01211 . 1 231 Glutathione S-transferase Gene Family AT1G75270 65.5 1.8e-83 306.2
Cma14g00821 . 66 273 Glutathione S-transferase Gene Family AT1G75270 64.1 2.6e-77 285.8
Cma04g00236 . 1 212 Glutathione S-transferase Gene Family AT1G75270 65.3 7.4e-77 284.3
Cma14g00821 . 55 274 Glutathione S-transferase Gene Family AT5G16710 77.3 5.2e-101 364.8
Cma04g00237 . 207 414 Glutathione S-transferase Gene Family AT5G16710 60.6 3.9e-72 268.9
Cma04g01211 . 3 229 Glutathione S-transferase Gene Family AT5G16710 54.6 2.2e-67 253.1
Cma04g00236 . 3 210 Glutathione S-transferase Gene Family AT5G16710 54.8 4.3e-63 238.8
Cma01g01364 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 68.1 5.0e-107 384.8
Cma09g00767 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 68.5 1.2e-105 380.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01135 Cma_Chr06 FPKM 4.306761 5.827586 4.333679 4.494778 2.096374 1.882218 2.354833 5.998304 4.930729 5.879446