Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01139 ATGAAGCTCGTTTGGTCACCGGAGAGAGCTTCCAAAGCGTATATGGACACAGTCAAATCCTGCGAGATTTTCGGCGAATTCGGCGTCCCGGAGCTTCTCTCCGCCATGGCCGCCGGTTGGAACGCGAAGCTCATCGTCGAGACTTGGTCGGACGGCGGTCCGGTAGCCACGAGCGTCGGACTTGCAATCGCTGCAGGTCACACCGGCGGGCGTCATCTCTGCATCGTTGCAGACGAACGGGCGAGATCGAAGTACGTGAAGGCGATGAGGGAAGCTGGAGTTGAATCGCCACCGGAAGTGGTGGTCGGAGATGTGGAGGCGTTGGCGGAGATCATAGCGGCGGTGGATTTTCTAGTGGTGGATTGTAAGGGGAAGGATTTCGTTAGGGTTTTGAGGGAAGCGAAGCCGAGTGAGAGAGGGGCAGTTTTGGTATGTAAAAATGCATGGGAACGAAACGGAAACGTCTTGGGGTTTAGATGGCAAGGAGTGCTTCGGAGAGGGACACGTGTGGTTAAGTCGGTTTTTTTGCCGGTCGGTAAAGGATTGGAAATTGCTCATATTGGAAGCTCCAGTGGCGGTGGCGGTGGCGGTGTCGGTTCGAACTCGGCGGCGAAGGGTGGCCGTTGGATCAAACGTGTCGACCTACGTTCTGGAGAGGAACACGTGTTTCGTGAATGA 678 55.9 MKLVWSPERASKAYMDTVKSCEIFGEFGVPELLSAMAAGWNAKLIVETWSDGGPVATSVGLAIAAGHTGGRHLCIVADERARSKYVKAMREAGVESPPEVVVGDVEALAEIIAAVDFLVVDCKGKDFVRVLREAKPSERGAVLVCKNAWERNGNVLGFRWQGVLRRGTRVVKSVFLPVGKGLEIAHIGSSSGGGGGGVGSNSAAKGGRWIKRVDLRSGEEHVFRE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7670809 7671840 - CmaCh06G011390.1 Cma06g01139 296693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01139 225 Pfam Protein of unknown function (DUF1442) 1 224 IPR009902 -
Cma06g01139 225 Gene3D Vaccinia Virus protein VP39 11 188 IPR029063 -
Cma06g01139 225 PANTHER ANKYRIN REPEAT/KH DOMAIN PROTEIN (DUF1442) 1 224 - -
Cma06g01139 225 PANTHER DUF1442 FAMILY PROTEIN 1 224 IPR009902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01139 - - - csv:101214121 341.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01139 Cma08g00956 CCT
Cma06g01139 Cma15g01164 CCT
Cma06g01139 Cma14g01974 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01139 Cma-Chr6:7670809 Cma15g01164 Cma-Chr15:7378510 8.44E-80 dispersed
Cma14g01974 Cma-Chr14:13882904 Cma06g01139 Cma-Chr6:7670809 2.30E-121 wgd
Cma02g01503 Cma-Chr2:8580185 Cma06g01139 Cma-Chr6:7670809 6.34E-74 wgd
Cma06g01139 Cma-Chr6:7670809 Cma08g00956 Cma-Chr8:5975228 1.00E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g481 . . . . . . . . Cmo06g01164 . . Cma15g01164 . Car15g01052 . . . . . . . . . . . . . . . . . . Cone12ag0356 Cone6ag0711 . . Csa05g00376 Chy09g01136 . Blo03g00394 . Bda07g00021 . . Bpe11g00252 . . . . Cmo15g01226 Cma06g01139 . Car06g00977 . Cpe08g00483 Cpe13g00209 Bhi12g00374 . . . . . . Cla01g00349 Cam01g0365 Cec01g0361 Cco01g0375 Clacu01g0368 Cmu01g0348 Cre09g2162 Lsi09g00376 . . Cme09g01667
Vvi15g456 . . . . Bpe14g00899 . . . Cmo08g00924 . Cma06g01139 Cma14g01974 Car06g00977 Car14g01779 . Cpe08g00483 Cpe03g01675 . . . . . . . Cla05g00241 Cam05g0263 Cec05g0264 Cco05g0269 Clacu05g0261 Cmu05g0249 Cre05g0311 . . . . Lsi05g01957 Csa06g00622 Chy11g01979 Cme06g00264 Blo02g00284 . . . . . . . Sed04g2168 Cmo06g01164 Cmo14g02035 Cma08g00956 . Car08g00838 . Cpe17g00311 . Bhi12g02610 Tan06g2167 Cmetu11g2209 Lac12g1903 Hepe03g0449 . Lcy13g0580 Cla06g00038 Cam06g0184 Cec06g0046 Cco06g0044 Clacu06g0045 Cmu06g0044 Cre06g0819 . Csa03g00972 Chy06g00245 Cme11g02508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009414 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01139 Cma_Chr06 FPKM 11.909283 9.927091 5.19746 6.153943 0.652207 1.065664 0.644309 11.578572 12.271781 10.034482