Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01146 ATGCCCTTTCCCTTTGCAACACCTCTTCTTCTCTTCTTAGCCATAATGGCTTCCTCTATTTCTTCGTTAGACGAGCCGGACGCGGTTCGGTTGTTGCGGACCGGAATTGTGAAAGCCAGATCCGAAATATATAACGTGAAACGACGTCGCTTTGAACGTGGGAATGTGCAGACCGCACTTGGCGATTGCCATACGCTCTACGAGGAAGCCGACAGCCGGCTTGCCGGGATGTTGGTTGGGGAGAATTATTCAGCGGATGATGCTCGGATATGGCTCAGCGCCGCCGTGGCTAATCATCGGAGTTGTTTGGATGGCTTGGAAGAAGTCGGCGCTGTGCCGTCGGCGGATGGGAATAACTTGACCATGTTGCTCACCGGAGCTCTGCATTTATACGACAAAATTGCCGCCGTGGAGGAGCGGAAGTGCTTACTGGATATTACAAGACGGGAACGAGTGGAGAAAGAGAGATTGAGGGAAAACGGGAGAATCAACTTGGCGAAATGGAATGCGGCGACGTCGAAGCCGGATTATGTGGTGGCGAAGGATGGCTCCGGCACCTACACAACCATAAACGGCGCGGTGGCGGCTCTGGCCAGAGATGGCCGTAGACGGCGGTCGGAGAGAGTGGTGATATATGTGAAAGCTGGAGTTTACAAGGAGAATGTGGAAATTGGAATGCAGTTGAAGAACGTCATGGTCGTCGGCGACGGCGCAGACAAAACCATCGTCACCGGTAACCGCAACGTCCCGGACGGCGCCACCACTTACAGCTCAGCTACATTTGGCGTTTCCGGTGACGGATTCTGGGCAAGAGACATAACATTCGAGAACACCGCCGGACCGGGAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCCGACCGCGTCGTCGTATACCGGTGCACAATAAAAGGCTATCAGGACACCCTGTTCCTCCACTCCCTCCGTCAATTCTACCGCGACTGCCAAATCTACGGCACCATAGATTTCATCTTCGGCAACGCCGCCGCCGTTCTCCAAAACTGCGACATCTTCGTCCGACGTCCGATACGCCACCAGGCCAACATGATAACGGCTCAAGGCCGCGACGATCCAGCCGAGGCCACCGGAATTTCGATTATCAGCTGCAGAGTCAGGGCGGCGCCCGAACTCGCCGCTGTCAAGGGCGATTTCAGGACCTACCTCGGTCGGCCGTGGAAGAGATTTTCAAGGACGGTGATTATGACGACGGATTTGGACGGATTAATTGACCCGAAAGGGTGGGGAGAATGGAGGGGCGATTTTGCACTTTCCACTCTGTTTTACGCTGAGTTTAAGAACACTGGCGGTGGTTCTTCTACTAGATTTAGGGTTCATTGGCCGGGATTTCATGTCCTCCGGAGCGCGGAGGAGGCGCGGCGTTTCACGGTAGCTGGGTTTCTTCGCGGTGACGCTTGGATTCCGGCCACCGGCGTGCCATTCGAGGCTGGGCCGGCGGCGGAAGAGGAGGTAAGAGGATTCGTTTCTGTTAGTGGTTCGATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCGCGATGCGGCAAACCTTCCCATCTTCAGTGTCCAAAGTGTATGGAATTGAAGCTTCCTCGGGAGGGTGCTGCTTTCTGCTCTCAGGATTGTTTCAAGGCATCTTGGAGCTCTCACAAATCAGTACATTTAAAAGAAAAACTGTCTCTGATAGGGACTGGTAATTCTGGGGAACAAAATTCAGATCGAGCAAGTGAAGGTTGGCTCTATTGCTTGAAGAAAGGGCAAGAAAGATCGCCAAAACTTCCCCATTTTGATTGGACAGGGACTCTAAGGCCATATCCCATATCTAGCAAGCGAATTGTTCCTCCTCACATAGAGCGACCAGATTGGGCAGATGACGGTCTTCCCAAAATTGAGCCAAATAGCGATTTCCAACATGTTGTTGAGATTTCAAGGGAAGTTTTAGATGCGGCTGCTAGAGTGATTCAACCGGGTATAACTACTGATGAAATTGACCGTGTGGTTCATGAGGCAACGATAGCTGCAGGTGGATATCCATCTCCACTCAATTATCATTTCTTTCCCAAGTCTTGCTGCACTTCTGTTAATGAAGTGATTTGTCATGGTATTCCTGATGCAAGGAAACTAGAAGATGGTGATATTGTAAACGTTGATGTGACTGTGTACTATAAAGGTTATCATGGTGATCTCAATGAGACATACTTCGTAGGAGAAGTTGATGAAGAGTCCCGACGTTTAGTCCAGTGTACTTACGAGTGTTTGGAGAAAGCTATAGCCATGGTGAAGCCTGGAGTTAGATTCCGTGATGTCGGAGAAGTAATTAATCGTCATGCTTCTATGTCGGGCTTGTCTGTGGTCAGGTCATATTGTGGGCATGGCATTGGAGAGCTCTTTCATTGTGCCCCTAATATTCCCCATTATGGAAGAAACAAAGCAGTTGGTGTGATGAAAGCTGGGCAGACCTTTACAATCGAACCAATGATCAATGCAGGAGTATGGCGTGATCGGATGTGGCCTGATGGGTGGACTGCTGTTACAGCTGATGGAAAACGAAGTGCTCAGTTCGAACACACACTCTTGGTAACAGAAACTGGAGTTGAAGTCCTCACAGCTCGGTTGCCTACATCTCCCAAGGTGTTTCCATGGCTGAGCTGA 2682 51.12 MPFPFATPLLLFLAIMASSISSLDEPDAVRLLRTGIVKARSEIYNVKRRRFERGNVQTALGDCHTLYEEADSRLAGMLVGENYSADDARIWLSAAVANHRSCLDGLEEVGAVPSADGNNLTMLLTGALHLYDKIAAVEERKCLLDITRRERVEKERLRENGRINLAKWNAATSKPDYVVAKDGSGTYTTINGAVAALARDGRRRRSERVVIYVKAGVYKENVEIGMQLKNVMVVGDGADKTIVTGNRNVPDGATTYSSATFGVSGDGFWARDITFENTAGPGKQQAVALRLNSDRVVVYRCTIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNAAAVLQNCDIFVRRPIRHQANMITAQGRDDPAEATGISIISCRVRAAPELAAVKGDFRTYLGRPWKRFSRTVIMTTDLDGLIDPKGWGEWRGDFALSTLFYAEFKNTGGGSSTRFRVHWPGFHVLRSAEEARRFTVAGFLRGDAWIPATGVPFEAGPAAEEEVRGFVSVSGSMAGGSDAAEAVTLTCARCGKPSHLQCPKCMELKLPREGAAFCSQDCFKASWSSHKSVHLKEKLSLIGTGNSGEQNSDRASEGWLYCLKKGQERSPKLPHFDWTGTLRPYPISSKRIVPPHIERPDWADDGLPKIEPNSDFQHVVEISREVLDAAARVIQPGITTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGYHGDLNETYFVGEVDEESRRLVQCTYECLEKAIAMVKPGVRFRDVGEVINRHASMSGLSVVRSYCGHGIGELFHCAPNIPHYGRNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPTSPKVFPWLS 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7721885 7734011 - CmaCh06G011460.1 Cma06g01146 296700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01146 893 Gene3D - 170 491 IPR012334 -
Cma06g01146 893 Gene3D Creatinase/methionine aminopeptidase superfamily 606 891 IPR036005 -
Cma06g01146 893 PRINTS Methionine aminopeptidase-1 signature 722 738 IPR001714 -
Cma06g01146 893 PRINTS Methionine aminopeptidase-1 signature 792 804 IPR001714 -
Cma06g01146 893 PRINTS Methionine aminopeptidase-1 signature 700 713 IPR001714 -
Cma06g01146 893 PRINTS Methionine aminopeptidase-1 signature 823 835 IPR001714 -
Cma06g01146 893 SUPERFAMILY HIT/MYND zinc finger-like 517 562 - -
Cma06g01146 893 Pfam Plant invertase/pectin methylesterase inhibitor 29 128 IPR006501 GO:0004857
Cma06g01146 893 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 798 816 IPR002467 GO:0006508|GO:0070006
Cma06g01146 893 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 114 IPR035513 -
Cma06g01146 893 PANTHER PECTINESTERASE 10 489 - -
Cma06g01146 893 Hamap Methionine aminopeptidase [map]. 635 881 IPR002467 GO:0006508|GO:0070006
Cma06g01146 893 ProSitePatterns Pectinesterase signature 2. 324 333 IPR033131 -
Cma06g01146 893 Pfam Pectinesterase 176 477 IPR000070 GO:0030599|GO:0042545
Cma06g01146 893 Gene3D - 516 563 - -
Cma06g01146 893 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 135 IPR035513 -
Cma06g01146 893 CDD MetAP1 651 879 IPR002467 GO:0006508|GO:0070006
Cma06g01146 893 Pfam zf-MYND-like zinc finger, mRNA-binding 522 565 IPR031615 -
Cma06g01146 893 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 10 489 - -
Cma06g01146 893 Pfam Metallopeptidase family M24 646 872 IPR000994 -
Cma06g01146 893 SUPERFAMILY Pectin lyase-like 171 489 IPR011050 -
Cma06g01146 893 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 647 880 IPR002467 GO:0006508|GO:0070006
Cma06g01146 893 SMART PMEI_2 18 130 IPR006501 GO:0004857
Cma06g01146 893 SUPERFAMILY Creatinase/aminopeptidase 605 880 IPR036005 -
Cma06g01146 893 CDD PMEI-like_4 8 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01146 Cma-Chr6:7721885 Cma02g00988 Cma-Chr2:5875752 1.50E-129 dispersed
Cma06g01146 Cma-Chr6:7721885 Cma06g01147 Cma-Chr6:7742847 3.45E-119 tandem
Cma15g00966 Cma-Chr15:5368498 Cma06g01146 Cma-Chr6:7721885 6.04E-102 transposed
Cma20g01161 Cma-Chr20:9202640 Cma06g01146 Cma-Chr6:7721885 2.70E-87 transposed
Cma14g01967 Cma-Chr14:13840381 Cma06g01146 Cma-Chr6:7721885 1.93E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01146 K01265 - csv:101217322 768.074