Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01147 ATGGTAGCCATTAAAAGCGTTATCGTTCTCGTTCTTGTTCTTGTTCTTTGGTCGGCCATTTTTGCTTACTCGGATGAAGAAGTGAAAAATTGGTGCAGCCAAACGCCATATCCAGCTCCATGTGAGCATTTTCTCACGGCAAAAAAAACCACCACAAAAAAAAACCGGCCAATCGCTTCAAAATCCCACTTCCTTAGAGTTCTGGTCGAATCGGCCATCGAGCGAGCCGTTTTGGCCCAAAAAAACGCCGTCGCTCTCGGCCCAAAGTGCCAAAACGACCGAGAAAAATCTGCATGGACCGACTGTGTCGAACTCTACGACCAAATCATTCACCGGCTCAACCGGACCGCCGACCGCTGCTCCCCGATCGATGTTCAGACCTGGCTCAGTGCTGCTCTCACAGCTCTCGACACGTGTCGGACTGGGTTTGAGGAGCTTGGGGTTTCGGCTTTCGGCTACCCTTTAACGGCTAATAATGTTTCGAAGCTGATTAGTGATGGGTTGTCGGTGAATAAGCCGGCTTCGTCTGAGGGGTTTGAGCCGCCGAGTATGAATGAAGGGTTTCCGACGTGGGTTAAGCCGGGAGAAAGGAAGCTGTTGCAGTCGAGCGCTCCGAATGCTAACGTGGTGGTGGCGAAGGATGGGTCTGGGAGATTTAGGACGGTGAGTGAGGCGGTCGCCGCCGCGAAGGGCGGAGGGAGGTTTGTGATTTATGTGAAGGCCGGGGTTTATAGTGAGAATGTTGAGATTAAGGCTAAGAATGTTATGTTGATCGGCGATGGCATCGGAAAAACTATCATCACCGGAAGTAGGAGCGTCGGCGGCGGTTCCACCACTTTTAAATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCACGAGACATAACTATCAGAAACACCGCCGGAGCATCAAACCATCAAGCGGTGGCGCTCCGTTCCGGCTCAGACCTCTCCGTCTACTACCGCTGCAGCTTCGAAGGCTTTCAAGACACTCTCTACGTCTACTCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATTTTCGGCAACGCCGCCGTCGTAATCCAAGATAGCAACATCATCGCCCGCGATCCTCCAAACAAGACGATCACGATCACCGCCCAAGGCCGCTCAGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAATCGCGTCGGCCGGTGGCCTCAGCGGCGTTAAGGCCTATTTAGGCCGACCGTGGAGGGAGTATTCGAGAACTGTAGTCATGACATCGTCGATAGGAGGGTTTATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCGCTAAATACTCTGTATTACGGCGAGTATAAGAACACCGGTGCGGGAGCTTCGACGGCGAATCGAGTGAATTGGAAGGGTTATCGAGTAATTACCAGCGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAGTTTCATTGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTCCCGTTCACTTCCGGCCTCTGA 1533 53.16 MVAIKSVIVLVLVLVLWSAIFAYSDEEVKNWCSQTPYPAPCEHFLTAKKTTTKKNRPIASKSHFLRVLVESAIERAVLAQKNAVALGPKCQNDREKSAWTDCVELYDQIIHRLNRTADRCSPIDVQTWLSAALTALDTCRTGFEELGVSAFGYPLTANNVSKLISDGLSVNKPASSEGFEPPSMNEGFPTWVKPGERKLLQSSAPNANVVVAKDGSGRFRTVSEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTIITGSRSVGGGSTTFKSATVAVDGDGFIARDITIRNTAGASNHQAVALRSGSDLSVYYRCSFEGFQDTLYVYSERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITITAQGRSDPNQNTGISIHNCRIASAGGLSGVKAYLGRPWREYSRTVVMTSSIGGFISPAGWMEWSGNFALNTLYYGEYKNTGAGASTANRVNWKGYRVITSAAEASKFTVGSFIAGGSWLPSTGVPFTSGL 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7742847 7745355 + CmaCh06G011470.1 Cma06g01147 296701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01147 510 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Cma06g01147 510 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 150 IPR006501 GO:0004857
Cma06g01147 510 CDD PMEI-like_3 31 176 - -
Cma06g01147 510 Pfam Plant invertase/pectin methylesterase inhibitor 28 166 IPR006501 GO:0004857
Cma06g01147 510 PANTHER PECTINESTERASE 7 509 - -
Cma06g01147 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 172 IPR035513 -
Cma06g01147 510 SMART PMEI_2 23 170 IPR006501 GO:0004857
Cma06g01147 510 PANTHER PECTINESTERASE 7 509 - -
Cma06g01147 510 Gene3D - 202 510 IPR012334 -
Cma06g01147 510 SUPERFAMILY Pectin lyase-like 202 509 IPR011050 -
Cma06g01147 510 Pfam Pectinesterase 208 495 IPR000070 GO:0030599|GO:0042545
Cma06g01147 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 171 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01147 Cma-Chr6:7742847 Cma14g01967 Cma-Chr14:13840381 0 dispersed
Cma06g01146 Cma-Chr6:7721885 Cma06g01147 Cma-Chr6:7742847 3.45E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01147 K01051 - csv:101217552 847.425