Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01178 ATGTTCCGACGAGCTTCCACCCTTTTGACCCGGCCTCTTCTCTCTGCAAGAGCTAGATCCTTCTCCGCCGATCTGCCGGCGGCTTCTTCAACTGACGATGCCTTTGTCGCCGCCTGGAAGAAGGCGATCCCCACTATTGATCCTCCTAAAACTCCTCTCTCTTTCATGGCTCCTCGTCCTGCTACGCCGTCTTCCATCCCTACTAAGCTCACTGTCAACTTTGTTCTTCCTTATGCCTCCGAGCTCTCGGCCAAAGAGGTTGACATGGTAATAATTCCAGCCACAACTGGGCAAATGGGTGTTCTTCCCGGCCATGTAGCTACAATCGCAGAGTTGAAACCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTATGCTGACATAATCGCCGTGGAAGCTGTGCCTGTAGACCAAATCGACCCCGACCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCAACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAATGCTGCCCTTACAGGATAA 603 52.07 MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRPATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7929729 7933055 + CmaCh06G011780.1 Cma06g01178 296732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01178 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 141 IPR020546 GO:0015986
Cma06g01178 200 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 1 200 - -
Cma06g01178 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cma06g01178 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cma06g01178 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cma06g01178 200 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 82 186 IPR001469 GO:0015986|GO:0045261|GO:0046933
Cma06g01178 200 Gene3D - 157 199 - -
Cma06g01178 200 Coils Coil 165 185 - -
Cma06g01178 200 Gene3D - 58 156 IPR036771 -
Cma06g01178 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01178 Cma14g01932 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01932 Cma-Chr14:13609252 Cma06g01178 Cma-Chr6:7929729 2.38E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01178 K02134 - csv:101206104 353.984