Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01228 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGAGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCATCTCCAGAAATATCGACTCGGGAAGCAATCGTTCAAGGAATCGACCGAGAATTCAAAGGACGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCACCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTTGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCAAATGACTCAAAAGAGATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCGGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACCGTTATGGCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCTATCGGAGTAGGATCAACTGTCACTGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCGATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGAGTAATATTGGATGA 951 51.1 MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSLSPSSRLMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8190100 8193884 + CmaCh06G012280.1 Cma06g01228 296782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01228 316 Gene3D - 50 109 - -
Cma06g01228 316 Coils Coil 206 226 - -
Cma06g01228 316 MobiDBLite consensus disorder prediction 115 140 - -
Cma06g01228 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 313 IPR044848 GO:0003700
Cma06g01228 316 MobiDBLite consensus disorder prediction 114 140 - -
Cma06g01228 316 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Cma06g01228 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Cma06g01228 316 PANTHER PROTEIN PHR1-LIKE 2 12 313 - -
Cma06g01228 316 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Cma06g01228 316 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Cma06g01228 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00477 Cma-Chr1:2417803 Cma06g01228 Cma-Chr6:8190100 5.68E-50 dispersed
Cma03g00610 Cma-Chr3:5365230 Cma06g01228 Cma-Chr6:8190100 3.40E-66 dispersed
Cma06g01228 Cma-Chr6:8190100 Cma10g01192 Cma-Chr10:8839571 8.19E-70 dispersed
Cma19g00201 Cma-Chr19:1331608 Cma06g01228 Cma-Chr6:8190100 3.89E-51 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma06g01228 Cma-Chr6:8190100 4.50E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35256 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01228 - - cmax:111473855 595.119