Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01231 ATGGACGGAACCATGGGGAAGAAAGCTAAGAAGAAGAACGGCCGAACTCCTACGAAGGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCACAACGGTGGAGATTGCTGATGATGATGTTTCAGTTGTTAAGGAGAATAGCCTATGCGGGCATATTGATACATGCTTTAATTTGAATGAGTTATCTTCTAAACTTGGGTCCTCTGAACCTATTAGCTGTGAAGATTGTCAAGAAAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAGACATGGGAAGAAGAAGGGGGGAACTTCGGTGGATGGTAAAGTTGATTCCAAAGCAATTTGGATTTGTTTGCAGTGTGGACATTATGCCTGTGGAGGAATTGGACTTCCTACAAACTCTCAGTGTCATGCTGTTCGACATGTCAGGCAAACTCGTCACCCGGTGGTGATTCAGTTCGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACACTACTTCCAGTAGAGAAAACTGAGGAGAATGGTGAACAGAAAGATGGTTTGTCTAATGTGGTGAAATTAATTAGGGACCAGTCTATGGAAGCCTCACCTGTGGATGTTGAGAATACATGGCAAGCAAGTAGCGACGTTACAGCTGCAACGAAATCGGAAAGTTCCATATTAAGTGATTTGGACAGAAGAAATCATTATGTTGTAAAAGGGATGATTAATCTAGGTAACACTTGTTTTTTCAATTCAATTCTTCAAAATCTCTTGGCCATTGATCTGTTGAGAGATCATTTAATGAAATTGGAAGAATGTGTTGGGCCTCTAACTATAGCTTTGAAGAAGATCCTTACAGAAGCAAGAATGGAAGGCAGAACGAAAGGTTCAATAAATCCAAGATCAGTTTTTGGTTGTATCTCTACCAAAGCCCCTCAGTTCAAAGGATACGAGCAACATGATAGTCACGAATTGCTTCGTGTCCTACTTGATGGATTGTCTACTGAAGAGCTGACTTCAAGGAAAACGAAGAAGTCGAAGGAAGAGATAATATCTAGAAATCCCACTCCTACTTTTGTCGATGAGATGTTCGGGGGGCAAATATCTAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCGACAGTTTACGAACCATTTCTAGATCTCTCTCTTCCTGTTCCAATGAAAAAATCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGAACCAAGAAATCTAAAGGGCCACCCAAGAGAAGTGGCAAGACGCATCCTAAACCTGACAAGGCTTCAGATGTTGTACCAGTTCAAATTGCTTCAGTTCCATCGTCTGGTAATGACTCCTCCCTTCAATCAGAGGCCAGCGCCAGTGGCACAACTATTATCATGGAGAAGACTTTAAGTTCTCAGAACGTTTCAGATGTTAAAGAGTCTGAAAAAGAAGTTGAGAACGAGAATGGAGGAGAATGTACTTCAGACGCTTTGACGTGGATGGATTTCCTTGGACCAGAACCAAATGCTGAAACTTATGATATTTCCACTACTCAGGATTCTGACAAAAATGTTGAAGTATTCATTAGTGATGATTCACAACAAAGCATCTGCGGGCCAAGTATGCACGTATCGCCTCTTCATAATGAGACGAATCAACGACCAGATTTTTCTCCAGCGGATTCGTGGGACGATGAATCCCCTTTACAGGTTCAAGCTTCTGATGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACTGCTGAAGTAGCAAAAGAAGATGATCAGGCTTCCTCATCAGTTTTGGGCTGTGCTCAAAATGATTTTGATGGATTTGGTCTTGGTGATATGTTTGATGAGCCTGAAGTCATTATGGGCCCCATTGCGAGGCCATCCACTGGGAATGAAGTTTTGGAAAGTAGTTTTATTAGTGAGTCTGAACCTGAGGAAGTTGATAATACTGATTCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACCAAGCCAGAACTTCTGTCCAATGAAAATGGATATAACTGTGAAAAATGCTCAAAAAGAGTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTAGCAGTGATGTAGAAAATGGATATGAAACAGCAGTAAGGGGTGATATATCATGCTTAGGCAAGAACTCTTCAGTTGAAGTAAAAAATCAAAGAAATGTGAATTTAGTAAATGGGTCCGTAAGTTATAACAGTGGCGAAAGCTCGAATTTGAAAGAGAATGTAGATTGTTCCAGTCAAGATTGCACAAAGCCTGTCAATTGCAAGACAGGCAAGACAGATTCCCTTGCTTTGGATGAGGATGAAGCTATGGTTGATGGAGATATGAATCCTGGGCTAGCACATTCTTCAGGTTGTAATAAAACCAGCAGTCAAGAATGTTCCGGTGATAAACCCAGTTGTTCTCTTTCCAACGACGATCCTAAGGGCGGTGAACATCCACAATCTAATACCAAGCCCATTAGTTCACAAATATGTGCTGAGAACAGTGAATCAGAAAAGGGTGAGGATGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCGATCTTGACAATTCATATAAAGAGGTTTAGTCCTGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCATGTTAGATTCAAGGAAACAATTGATCTCAAACCATACATGGATACCAGGCGTACAGATGGGGAGAAGTATAATTATCGGTTGGTCGGGGTCGTGGAGCACTCCGGATCTATGAGAGGAGGCCATTATGTTGCATATGTGAGAGGGGGGAACAGGAGGAGAAGCAGCAGTGGGGAAGCTGAGGAAGGCGCTTCTGTTTGGTTTTATGCAAACGATGCCAGCGTAAACGAGGTTACCCTGGATCGGGTTCTCGGTTGTGATGCATACATCTTGTTTTATGAGATAACCTGA 2976 42.54 MDGTMGKKAKKKNGRTPTKEKRVSSSSPRKVPQRSSTTVEIADDDVSVVKENSLCGHIDTCFNLNELSSKLGSSEPISCEDCQESSADRRGSKGKARHGKKKGGTSVDGKVDSKAIWICLQCGHYACGGIGLPTNSQCHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDGLSNVVKLIRDQSMEASPVDVENTWQASSDVTAATKSESSILSDLDRRNHYVVKGMINLGNTCFFNSILQNLLAIDLLRDHLMKLEECVGPLTIALKKILTEARMEGRTKGSINPRSVFGCISTKAPQFKGYEQHDSHELLRVLLDGLSTEELTSRKTKKSKEEIISRNPTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKSLAKKVQPVSRTKKSKGPPKRSGKTHPKPDKASDVVPVQIASVPSSGNDSSLQSEASASGTTIIMEKTLSSQNVSDVKESEKEVENENGGECTSDALTWMDFLGPEPNAETYDISTTQDSDKNVEVFISDDSQQSICGPSMHVSPLHNETNQRPDFSPADSWDDESPLQVQASDVLLLPYKEESSTAEVAKEDDQASSSVLGCAQNDFDGFGLGDMFDEPEVIMGPIARPSTGNEVLESSFISESEPEEVDNTDSPVSVESCLTYFTKPELLSNENGYNCEKCSKRVQQQRLEMKKQSKVASSDVENGYETAVRGDISCLGKNSSVEVKNQRNVNLVNGSVSYNSGESSNLKENVDCSSQDCTKPVNCKTGKTDSLALDEDEAMVDGDMNPGLAHSSGCNKTSSQECSGDKPSCSLSNDDPKGGEHPQSNTKPISSQICAENSESEKGEDGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHIKRFSPDARGRYSKLNGHVRFKETIDLKPYMDTRRTDGEKYNYRLVGVVEHSGSMRGGHYVAYVRGGNRRRSSSGEAEEGASVWFYANDASVNEVTLDRVLGCDAYILFYEIT 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8207458 8212254 + CmaCh06G012310.1 Cma06g01231 296785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01231 991 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 193 IPR013083 -
Cma06g01231 991 Gene3D Cysteine proteinases 217 424 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 781 852 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 1 42 - -
Cma06g01231 991 Pfam Zn-finger in ubiquitin-hydrolases and other protein 79 169 IPR001607 GO:0008270
Cma06g01231 991 Pfam Ubiquitin carboxyl-terminal hydrolase 238 988 IPR001394 GO:0004843|GO:0016579
Cma06g01231 991 MobiDBLite consensus disorder prediction 397 431 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 739 758 - -
Cma06g01231 991 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 238 253 IPR018200 GO:0004843|GO:0006511
Cma06g01231 991 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 921 938 IPR018200 GO:0004843|GO:0006511
Cma06g01231 991 MobiDBLite consensus disorder prediction 74 108 - -
Cma06g01231 991 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 989 - -
Cma06g01231 991 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 237 991 IPR028889 -
Cma06g01231 991 MobiDBLite consensus disorder prediction 402 418 - -
Cma06g01231 991 SUPERFAMILY Cysteine proteinases 229 989 IPR038765 -
Cma06g01231 991 MobiDBLite consensus disorder prediction 791 811 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 818 838 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 28 42 - -
Cma06g01231 991 SMART Zf_UBP_1 107 160 IPR001607 GO:0008270
Cma06g01231 991 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 7 989 - -
Cma06g01231 991 ProSiteProfiles Zinc finger UBP-type profile. 53 190 IPR001607 GO:0008270
Cma06g01231 991 Gene3D Cysteine proteinases 572 699 - -
Cma06g01231 991 Gene3D Cysteine proteinases 721 991 - -
Cma06g01231 991 SUPERFAMILY RING/U-box 54 171 - -
Cma06g01231 991 MobiDBLite consensus disorder prediction 466 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01231 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1546.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01231 Cma14g01897 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01231 Cma-Chr6:8207458 Cma15g01323 Cma-Chr15:8308673 5.49E-10 dispersed
Cma14g01897 Cma-Chr14:13415635 Cma06g01231 Cma-Chr6:8207458 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01231 Cma_Chr06 FPKM 6.686723 9.450141 11.251079 12.504275 7.05204 6.609273 6.656163 16.498608 15.54981 15.198133