Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01261 ATGATTCTGCCGCTGCCGCCGTCCATTTCCGCCGCCAAAATGCAGTCGGCGATAATATCTCCGTCTCCACGCGCCGCCCCGTTTATCGCAGTCACACCATCGACCAATATCCAACGAAGGCGTCCCCTATTTGTTAGAGCCTCGATTTCCAATGTAGAGTCTCCAACGCCCAATTCCCCCGCCGTTCAAAAGCTCAACAAGTATAGCTGTCGCATTACCGAGCCGAAGTCGCAGGGCGGCTCTCAGGCGATTCTCCACGGCGTTGGCCTCTCTGACGACGATCTCAGCAAGCCTCAGATTGGCATTTCGTCGGTCTGGTACGAGGGAAATACCTGCAATATGCACCTGTTGCAGCTCTCCGAGGCTGTCAAATATGGAGTTCAAGCAGCCGGCATGGTTGGCTTTAGGTTCAATACGATTGGCGTTAGTGACGCCATTTCCATGGGAACCAGAGGCATGTGCTATAGCTTGCAGTCGAGGGACTTGATTGCTGATAGCATCGAGACTGTCATGAGTGCTCAGTGGTACGACGGGAATATCTCCATCCCTGGCTGTGATAAGAATATGCCTGGTACAATAATGGCGATGGGAAGGCTGAATCGACCGAGTATTATGGTTTATGGTGGAACCATCAAGCCTGGTCATTTTCAAGGCCATACATACGACATAGTGTCTGCATTTCAGGTATATGGAGAATATGTAAGCGGGTTGATAAGTGATGAACAGAGGAAGAATGTTGTCCGCAACTCTTGCCCGGGCGCTGGGGCTTGTGGTGGTATGTATACAGCTAATACAATGGCTTGTGCTATTGAAACAATGGGCATGTCTCTTCCTTACAGCTCGTCAACGCCCGCTGAGGATCCACTAAAGTTGGACGAATGCCGTTTAGCTGGAAAATATCTTCTGGAATTATTGAAGATGGATTTGAAACCCCGGGATATTATTACAGAAAAATCACTACGAAATGCAATGGTTGTTGTTATGGCTTTGGGTGGTTCCACTAATGCAGTGCTACACTTGATTGCTATAGCAAGGTCTGTTGGTTTGAATTTAACCCTTGATGATTTTCAGAAGGTCAGCGATCAGGTTCCTTTACTTGCCGATCTTAGGCCGAGTGGAACATATGTCATGGAGGATATTCACAAGATTGGAGGAACACCTGCAGTTATTCGTTATTTGTTGGAGAACGAACTTTTAGAGGGAGATTGTTTAACTGTCACGGGAAAAACGTTAGCCGAAAACGCTAAACTTTTCCTACCCTTAACTGAAGGGCAGGATGTTATTCAATCTTTGGAGAATCCCATCAAGAAAACAGGGCACCTTCAAATATTATATGGAAATCTTGCTCCCGAGGGTTCAGTAGCTAAGATCACTGGAAAGGAGGGGCTATATTTCTCTGGTCCTGCTCTTGTTTTTGAAGGGGAAGAATCGATGATTGCAGCAATAACAGAGGACCCTTCAAGTTTTAAGGGGAAAACGGTGATCATTAGGGGTGAGGGCCCTAAAGGGGGACCGGGCATGCCTGAAATGTTAACACCGACTAGTGCCATAATGGGGGCTGGTTTGGGGAAGGAAGTGGCATTGCTGACTGATGGTAGATTCTCCGGTGGTTCACACGGCTTCGTTGTCGGTCACATATGCCCTGAAGCATTGGTATATGGAGAATATGTAAGCGGGTTGATAAGTGATGAACAGAGGAAGAATGTTGTCCGCAACTCTTGCCCGGGCGCTGGGGCTTGTGGTGGTATGTATACAGCTAATACAATGGCTTGTGCTATTGAAACAATGGGCATGTCTCTTCCTTACAGCTCGTCAACGCCCGCTGAGGATCCACTAAAGTTGGACGAATGCCGTTTAGCTGGAAAATATCTTCTGGAATTATTGAAGATGGATTTGAAACCCCGGGATATTATTACAGAAAAATCACTACGAAATGCAATGGTTGTTGTTATGGCTTTGGGTGGTTCCACTAATGCAGTGCTACACTTGATTGCTATAGCAAGGTCTGTTGGTTTGAATTTAACCCTTGATGATTTTCAGAAGGTCAGCGATCAGGTTCCTTTACTTGCCGATCTTAGGCCGAGTGGAACATATGTCATGGAGGATATTCACAAGATTGGAGGAACACCTGCAGTTATTCGTTATTTGTTGGAGAACGAACTTTTAGAGGGAGATTGTTTAACTGTCACGGGAAAAACGTTAGCCGAAAACGCTAAACTTTTCCTACCCTTAACTGAAGGGCAGGATGTTATTCAATCTTTGGAGAATCCCATCAAGAAAACAGGGCACCTTCAAATATTATATGGAAATCTTGCTCCCGAGGGTTCAGTAGCTAAGATCACTGGAAAGGAGGGGCTATATTTCTCTGGTCCTGCTCTTGTTTTTGAAGGGGAAGAATCGATGATTGCAGCAATAACAGAGGACCCTTCAAGTTTTAAGGGGAAAACGGTGATCATTAGGGGTGAGGGCCCTAAAGGGGGACCGGGCATGCCTGAAATGTTAACACCGACTAGTGCCATAATGGGGGCTGGTTTGGGGAAGGAAGTGGCATTGCTGACTGATGGTAGATTCTCCGGTGGTTCACACGGCTTCGTTGTCGGTCACATATGCCCTGAAGCATTGAACCGGAGTATTGATGTTCAATTATCCGAACAAGAGCTGGAAGAACGAAGAAAGAACTGGATTCCACCTGCATACAGGGCTACCCGAGGCGTTCTCTACAAGTACATCAGGAATGTGCAGGCGGCATCGAAAGGGTGTGTGACGGACGAGTAG 2775 46.88 MILPLPPSISAAKMQSAIISPSPRAAPFIAVTPSTNIQRRRPLFVRASISNVESPTPNSPAVQKLNKYSCRITEPKSQGGSQAILHGVGLSDDDLSKPQIGISSVWYEGNTCNMHLLQLSEAVKYGVQAAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGLISDEQRKNVVRNSCPGAGACGGMYTANTMACAIETMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLKPRDIITEKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLNLTLDDFQKVSDQVPLLADLRPSGTYVMEDIHKIGGTPAVIRYLLENELLEGDCLTVTGKTLAENAKLFLPLTEGQDVIQSLENPIKKTGHLQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAITEDPSSFKGKTVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEALVYGEYVSGLISDEQRKNVVRNSCPGAGACGGMYTANTMACAIETMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLKPRDIITEKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLNLTLDDFQKVSDQVPLLADLRPSGTYVMEDIHKIGGTPAVIRYLLENELLEGDCLTVTGKTLAENAKLFLPLTEGQDVIQSLENPIKKTGHLQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAITEDPSSFKGKTVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEALNRSIDVQLSEQELEERRKNWIPPAYRATRGVLYKYIRNVQAASKGCVTDE 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8381605 8389450 + CmaCh06G012610.1 Cma06g01261 296815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01261 924 Gene3D - 440 566 IPR042096 -
Cma06g01261 924 Gene3D - 763 894 IPR042096 -
Cma06g01261 924 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 553 924 - -
Cma06g01261 924 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 43 550 - -
Cma06g01261 924 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 527 538 IPR020558 GO:0003824
Cma06g01261 924 SUPERFAMILY LeuD/IlvD-like 441 555 - -
Cma06g01261 924 Pfam Dehydratase family 97 554 IPR000581 GO:0016836
Cma06g01261 924 Pfam Dehydratase family 553 920 IPR000581 GO:0016836
Cma06g01261 924 SUPERFAMILY IlvD/EDD N-terminal domain-like 553 762 IPR037237 -
Cma06g01261 924 TIGRFAM ilvD: dihydroxy-acid dehydratase 81 554 IPR004404 GO:0004160|GO:0009082
Cma06g01261 924 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 185 195 IPR020558 GO:0003824
Cma06g01261 924 PANTHER BNAA01G23200D PROTEIN 553 924 - -
Cma06g01261 924 PANTHER BNAA01G23200D PROTEIN 43 550 - -
Cma06g01261 924 SUPERFAMILY LeuD/IlvD-like 764 923 - -
Cma06g01261 924 SUPERFAMILY IlvD/EDD N-terminal domain-like 54 439 IPR037237 -
Cma06g01261 924 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 850 861 IPR020558 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01261 K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] - csv:101217323 981.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01261 Cma14g01879 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01879 Cma-Chr14:13306893 Cma06g01261 Cma-Chr6:8381605 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g860 . . . . . Bpe14g01299 . . . . Cma06g01261 Cma14g01879 Car06g01084 Car14g01681 . Cpe08g00385 Cpe03g01576 . . . . . . . . . . . . . . . . . Cone4ag0387 . . . Cme06g00401 . . . Bda13g00022 . . . . . Cmo06g01270 Cmo14g01927 . . . . . . . . . . . . . Cla05g00366 Cam05g0399 Cec05g0404 Cco05g0404 Clacu05g0394 Cmu05g0379 Cre05g0441 . Csa03g01120 Chy06g00388 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007213 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01261 Cma_Chr06 FPKM 1.968285 2.116813 1.919876 1.657064 30.317932 30.952713 30.833033 1.73618 1.461806 1.401884