Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01262 ATGAAGATCATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAATGGCAGACAGTTTATTCAGACAGAGGGTGGTTCATCCTTATCTAATTGTTTGAGAAAGCCTGATTTCATGATGGAAAAGGGGATGAATGGCATGAAGGGAGCAGGGGTGCTTGTCAGTGAAAATGGGCATGATTTGAGATTAGATAGTAGTTCCAAAAATATTCCTGGTGACGATTTTAAGGATCGCAGTAACACCATTATTCTTTCAGCGGGAGAGAATTCTTATGCATCACAAAATCATATTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCGAAACCTTTTAATTCCCCTCGTCGCATGGATAAAGGGATAACGATATCTGTCAACACTCATTCCAAACCTCCTGCTCGTCAAGAAAATACTGTCATTCCAAAAACAAGAGAACCTGATCATAAGTACAGACCTCAGATGCTAAGGACTGTAAGATGGAGAACACATCGAATGGACAGTCCACACGTTATATGCCAAATGCTCCAAAGAGATCCAGCACAATCATTAAAGGGAAGGAAAAGGCTGTTGAGGAATCAAATAACACTCATAATCGTCATGAGAAGCAAGTTTTGGATTCTCACCGAAAAGGCTGTTGAGGAATCAAATAACACTCATAATCGTCATGAGAAGCAAGTTTTGGATTCTCACCGGTTTGTTAACTCCCCTAGAGCCACTGGACATAAAAGGCTGGTCAGAAATGGTTGTATCTCACCTCATAATATATCAACAAAGACAAAAAATTTATCCGAGCAGTGTGAAAAGAGTTCTAGAGGTGTAGACCAGAGCAATTTAGGGAGCATGCCATCAAGCAGTCCATCTTGTCTGATTGATATAAAGGATATAGTTGCGGAAGACAATCGTATTAACAAAGATAAAGGAAAAAGGATTATGCGTCAAACTTCTACATCACATGATGATGATGATATCAAAGTAATTTGTGCATCTAGCAGTGACGCGGAAAAGGCCGTTGGAGCTAATCCAGTCAGAACTTCCAGGTTAGATACATCTGAATGTTCTGAAGAATTAGGTGGTTGGAGAAGAACACATAATAATTCAAGGAAGGGGATTTTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAAATAAATAACATTGGAAAACTTTCTAATGGAGAAACTGAAATTGGTATGGAGAGAAAAATCCCTTACAAGAAAGACCAAGGAGCGGAAATTGGTTGTGCTAGAAATGCTGATACAGCTCAAAGGGCTTCTGGCATTGTAACCAAGATAGACCAGACCGTTGGACCAATGCATGCTGAAAGCAAACTCAACAAAAGACGGAAGAAACTTGGATCAACCTCACAAACTAATACTTCATCACACACACTCAACAAAAGACGGAAGAAACTTGGATCAACCTCACAAACTAATACTTCATCACACGTTCCAGACGTTGTGTACCTCGATACACCTGGGGAGTCTTCAAATGCAAGATCAAATAGACTCCAGAATCAAAGAATTTGTGATAACTTGAATGATGTTATTGAGGTTGATGAGTTGTCACCTGAAATTAGACACCCTGCCTCCCAGACTGTTGGTTGCCCAAATGATGACAGCTTAGATGCTAAGGCAAGACAACTTGAAGCTGATGAGATGTTGGCTCGTGACCTTCAGGAACAACTATACCAGGAGATGCCTGTTGGAGAAGAGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAGAATGGGCATTTTGCACCTCCTTCCCGGCGGACATACAATAGTCAAAGGGGCTCGATGGTAGCACAGGCAAATAGACGCACTCGATCTCAATCTGTACAAAGTTCCTCTAATAGAACACGGACTCGAGTAACCCACTCTGCACGAATGGCACAAATGAGAAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTATGCATATGGATTTGGATATGAGACTTGATATATTGGAAGCGCTCGAGGCCGCAGTTGGAGATGTGGAAGATGTGAGAATGAATAGGAGGGGCATCTTGCACATCCAGCGCGATTTTAACGAGAATGATTACGAAATGTTGCTATCCCTCGACGAGAACAATCACCGCCATGCTGGTGCATCGACGAACCGTATTAATAGTTTGCCTCAATCTACGGTTCAGACCGACAGCATGGAAGAAGCTTGTGCAATTTGTCTCGATACACCGACCGTTGGAGATGTCATTCGCCATCTACCTTGCTTACACAAATTTCATAAAGATTGTATCGATCCATGGCTACAGAGGCGAACGTCGTGCCCACTTATTAGAATGCTTGATCTCGGGCAGTCGGAAGCGTTAGACTTCAAAGGTGCAATTCTCCATTGGGGAACAGAGCAAAGTTTCCAGCTCGAAGTCGGAAGCGTTAGACTTCAAAGGTGCAATTCTCCATTGGGGAACAGAGCAAAGTTTCCAGCTCGAACGAGTGGGTATGGTTTTGAATGA 2562 42.12 MKIMKEMETEWIMDVPDTPDRLAARQINGRQFIQTEGGSSLSNCLRKPDFMMEKGMNGMKGAGVLVSENGHDLRLDSSSKNIPGDDFKDRSNTIILSAGENSYASQNHILLRKGGREKYSCQGPKPFNSPRRMDKGITISVNTHSKPPARQENTVIPKTREPDHKYRPQMLRTVRWRTHRMDSPHVICQMLQRDPAQSLKGRKRLLRNQITLIIVMRSKFWILTEKAVEESNNTHNRHEKQVLDSHRFVNSPRATGHKRLVRNGCISPHNISTKTKNLSEQCEKSSRGVDQSNLGSMPSSSPSCLIDIKDIVAEDNRINKDKGKRIMRQTSTSHDDDDIKVICASSSDAEKAVGANPVRTSRLDTSECSEELGGWRRTHNNSRKGIFLSNPSGNSFKKINNIGKLSNGETEIGMERKIPYKKDQGAEIGCARNADTAQRASGIVTKIDQTVGPMHAESKLNKRRKKLGSTSQTNTSSHTLNKRRKKLGSTSQTNTSSHVPDVVYLDTPGESSNARSNRLQNQRICDNLNDVIEVDELSPEIRHPASQTVGCPNDDSLDAKARQLEADEMLARDLQEQLYQEMPVGEEIDEHLAMALQQVENGHFAPPSRRTYNSQRGSMVAQANRRTRSQSVQSSSNRTRTRVTHSARMAQMRNQFFGGSHRVSTRQRNVNFPMHMDLDMRLDILEALEAAVGDVEDVRMNRRGILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTDSMEEACAICLDTPTVGDVIRHLPCLHKFHKDCIDPWLQRRTSCPLIRMLDLGQSEALDFKGAILHWGTEQSFQLEVGSVRLQRCNSPLGNRAKFPARTSGYGFE 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8390476 8396515 + CmaCh06G012620.1 Cma06g01262 296816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01262 853 MobiDBLite consensus disorder prediction 604 645 - -
Cma06g01262 853 CDD RING-H2_PA-TM-RING 755 796 - -
Cma06g01262 853 PANTHER - 462 794 - -
Cma06g01262 853 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 462 794 - -
Cma06g01262 853 MobiDBLite consensus disorder prediction 607 645 - -
Cma06g01262 853 Coils Coil 557 577 - -
Cma06g01262 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 799 IPR013083 -
Cma06g01262 853 ProSiteProfiles Zinc finger RING-type profile. 755 796 IPR001841 -
Cma06g01262 853 MobiDBLite consensus disorder prediction 445 518 - -
Cma06g01262 853 MobiDBLite consensus disorder prediction 486 501 - -
Cma06g01262 853 SUPERFAMILY RING/U-box 748 794 - -
Cma06g01262 853 Pfam Ring finger domain 754 794 IPR001841 -
Cma06g01262 853 SMART ring_2 755 795 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01262 - - - csv:101205482 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01262 Cma-Chr6:8390476 Cma15g00098 Cma-Chr15:462268 2.10E-14 dispersed
Cma14g01878 Cma-Chr14:13298814 Cma06g01262 Cma-Chr6:8390476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g854 . . . . . . . . . . Cma06g01262 . Car06g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01271 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00389 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01262 Cma_Chr06 FPKM 9.782396 11.645033 8.336299 8.856588 9.790218 9.417483 9.739139 11.499818 11.544662 11.155763