Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01264 ATGGAACGACCAAGAGTTGTTACGGATGTCCGAATTACTGCAGATCATGGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTGTGAGGGATCGAGCTGCTTTAAGAAGGTTGTCGGATGTGAGTGATGGAGATCAACAACAGCAGCCGCAAAAGAGAACAGGTCTTGCTTTAAATCCGAGCAGCCAACTCGTATATGAGGATCTCAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTATCATCAATGCCCGCGAATGCTTATGCAGCTGAAAGGGATAACAAGGTTTATCCTAACAACACAAGCAAATATCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGTTCAATTTGACCCCTCAACACTGGCCTTGCATGCAATGGAATCACCTCATTCATGTTATCCTTGTGGGGCTGGATTGGGAGATTTCCCTGTCACTGGCAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATTATATCCATTAGGAAAAACATCTCGTGTGAACAACTTATCAGAAAGACATACGCTGTCTGTAAGTATGTCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTCGATTCACTTATCTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATCATGAGCTGGAAAGCGCAGGGAGTTCTCAAAGACTCAGAATAATTCTTGTTTCTACAAATGATTGTTGTGAGAGTCCTACTTCTATTGAAGGAAGGGTGGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTAAATGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGACAGAGTTTCACAAGCCAGACTAGCCAGGTGGGAACCATCTCAGATCCTAGTCCCAATTTTTGCACTGTTTCTTCACATGCTACAGACTTAAAAGATGCCAATTCACCTATACCAAATTTGGCAGGAATGTTTCCTAGACCTGGTGGTCAATTGTTAATACCCATTCAAACCCCACGCAAGTCACTTAATCAAACACCTATATTTTCTCCGGTTACAGTAATCCAAAAAGATTTTAAGAACGTGGATCCAACATACGCAGAAGATGCTAGAAACTTCACTCCATTTGTTGCAGAAAAACGTCCATGTGATACGGTTTATTATGTTGATGCAATGGGCCGTCACAATAACCTTTACCATGGTTCTCCGCTGATGAATTATCATCATGACAAATCTACAGTGGAAGCTGATGAGAAATACAAAGCTCATGATGTTCATTTCCCACAAAGCTCCAGCGAACATTTTGTGCCTGCAACTTACTGGGATCAAAGTGATACACATTCAATCAAAACTCTGCTCAAGGAACGGGCAGTTAATTATGAACAGCTGTACTTGGATGCCGAATATTTGATGCAGTTAAGATCTGGAACCACCCACATGAGACAAACAATGATGCATTCACATTCTGAGCCCCTACTAAAGGAACAGGATCAAAAGTTGAAACATGGAGGAGCCTATCCACTGAACTCATTCAATGATAGTGATCAATTATATTCAATGGCAATATCAAGTTCCTTTCAGGATTTCCAAACGATATGGAAACAGAGAGTTGGCGGGGAATTTCAAGATGCCAAGTATGAGAAACATGGAACGTTGGCGTCTGGTAGTGAGAATGAAGGATATGAAGAATGCAATTTTGATGAAAAAAAGGTTAATTTCAATGGAAGGATTTATGTCCCATCACTTAATGGTGATGAAAAATACAAATACTTGCAACATGTTGACTACCAACAAAATGGTTACCCCCCGCTAGAGGCACGAAGCCTTGGAGGCAGAACTTCTGCAGAACGAGGGTTTGAATTAGAAAAATCTACAGATGTCGTGGATGGCCCCTCCCTCATTTACCATTTAGAAACAACTGTTCCAAAAGTTTTCGAGGAGAGACAATATTCTGTCGAGGATCAACGAACCACTTCTGATATAGTAAGGAGCCAACCATTTTCTTGCGCATCTTCTGATCTACTACCTCTTACAACTCAAGCTTTGTGCGACAGAAAGATCATAAATCAGGAACCAACATGGGATAGTTCTGCTTTAGGTAGAGATGTTTCTCTAAGCGATGAGAACTTCGTAACCTGTAATTACCGTAAGGTTGCCGACCATAGTAGAAAAAAGAGCAACCTTGATGATTCTCTATTTATCAAATCATCAAATTCAGATGATTTTCATAGCAATGAGGACGTGGGATTAGCTGTAATAGTTGAAGATGTAACTCATAGTATACCTCCCGACATACCCTTAGCTTCTGGAGTTATCCCACGGGTTGAAAATGAGGCCAGTGATGACTCTCCATCTTCAAGAGGACATGATGCTCATATTCCTAGTACGGAAACTGACCATGAGGATGCAGACAGTATTCTTAGTTCTAGGGATGAATCAATGAGCGAGGCAGCAATAGCTGAAATTGAAGCCGGCATCTATGGCCTGCAGATCATAAAGAATGAAGATCTCGAGGAACTGCAAGAATTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACGGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGAAGTTTTTCTGAGCAAGAAAGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTGTTGGCTTTTTATGGAGTGGTTCCTGATGGACCTGATGGAACGTTGGCAACTGTAACGGAGTATATGGTAAACGGGTCATTAAGGCATGTTCTTTTAAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATGATTGCAATGGATGCAGCTTTTGGCATGGAATATTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTGGCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACTGGCGAGGAGCCATATGCCAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACTCTTAGACCACCGATCCCAAAACGTTGCGATACCGAATGGAAAAAGCTAATGGAAGATTGTTGGTCACCTGAACCTGCAGCGAGGCCATCGTTCACCGAGATAACGAATAGACTTCGCAGCATGTCGATAGCGCTCCAGATCAGAAAGAGGCCAAATGTAGGTAGTAGATGA 3456 41.84 MERPRVVTDVRITADHGVSDVCVQTGEVFSPQFVRDRAALRRLSDVSDGDQQQQPQKRTGLALNPSSQLVYEDLSGILGLKRMNSESSSELSSMPANAYAAERDNKVYPNNTSKYQWEYSATGQASGAYADEINRGVQFDPSTLALHAMESPHSCYPCGAGLGDFPVTGKMKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNISCEQLIRKTYAVCKYVHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELESAGSSQRLRIILVSTNDCCESPTSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGTISDPSPNFCTVSSHATDLKDANSPIPNLAGMFPRPGGQLLIPIQTPRKSLNQTPIFSPVTVIQKDFKNVDPTYAEDARNFTPFVAEKRPCDTVYYVDAMGRHNNLYHGSPLMNYHHDKSTVEADEKYKAHDVHFPQSSSEHFVPATYWDQSDTHSIKTLLKERAVNYEQLYLDAEYLMQLRSGTTHMRQTMMHSHSEPLLKEQDQKLKHGGAYPLNSFNDSDQLYSMAISSSFQDFQTIWKQRVGGEFQDAKYEKHGTLASGSENEGYEECNFDEKKVNFNGRIYVPSLNGDEKYKYLQHVDYQQNGYPPLEARSLGGRTSAERGFELEKSTDVVDGPSLIYHLETTVPKVFEERQYSVEDQRTTSDIVRSQPFSCASSDLLPLTTQALCDRKIINQEPTWDSSALGRDVSLSDENFVTCNYRKVADHSRKKSNLDDSLFIKSSNSDDFHSNEDVGLAVIVEDVTHSIPPDIPLASGVIPRVENEASDDSPSSRGHDAHIPSTETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKNEDLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSGSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDTEWKKLMEDCWSPEPAARPSFTEITNRLRSMSIALQIRKRPNVGSR 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8399165 8405456 - CmaCh06G012640.1 Cma06g01264 296818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01264 1151 ProSitePatterns Protein kinases ATP-binding region signature. 876 901 IPR017441 GO:0005524
Cma06g01264 1151 Gene3D - 189 273 - -
Cma06g01264 1151 ProSiteProfiles Protein kinase domain profile. 870 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01264 1151 SMART PB1_new 185 272 IPR000270 GO:0005515
Cma06g01264 1151 MobiDBLite consensus disorder prediction 813 842 - -
Cma06g01264 1151 Pfam Protein tyrosine and serine/threonine kinase 872 1133 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 Pfam PB1 domain 186 271 IPR000270 GO:0005515
Cma06g01264 1151 MobiDBLite consensus disorder prediction 46 65 - -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 44 65 - -
Cma06g01264 1151 SMART serkin_6 870 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01264 1151 CDD STKc_MAP3K-like 876 1133 - -
Cma06g01264 1151 SUPERFAMILY CAD & PB1 domains 186 274 - -
Cma06g01264 1151 SUPERFAMILY Protein kinase-like (PK-like) 859 1132 IPR011009 -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 798 843 - -
Cma06g01264 1151 Gene3D Transferase(Phosphotransferase) domain 1 958 1147 - -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 310 329 - -
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 989 1007 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 1060 1082 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 1104 1126 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 952 965 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 81 1145 - -
Cma06g01264 1151 Gene3D Phosphorylase Kinase; domain 1 863 957 - -
Cma06g01264 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Cma06g01264 1151 CDD PB1_UP2 174 269 - -
Cma06g01264 1151 PANTHER SERINE-THREONINE PROTEIN KINASE 81 1145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01264 - - - cmax:111473634 2297.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01264 Cma14g01874 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00673 Cma-Chr5:3463747 Cma06g01264 Cma-Chr6:8399165 8.13E-25 dispersed
Cma06g01264 Cma-Chr6:8399165 Cma13g00852 Cma-Chr13:7026725 2.80E-37 dispersed
Cma14g01874 Cma-Chr14:13282083 Cma06g01264 Cma-Chr6:8399165 1.56E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68655 PF07714 PK_Tyr_Ser-Thr 7.30E-62 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01264 Cma_Chr06 FPKM 0.540696 1.06786 0.302022 0.350975 0.897233 0.861571 0.784117 0.078277 0.099507 0.035149