Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01265 ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGACGTCGAGGCTCTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATACGCAATGCCACGGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGCAACAGAATCGGAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGATGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTATCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGCAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACTAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCTTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG 1344 47.47 MAMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPISPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8417871 8422489 + CmaCh06G012650.1 Cma06g01265 296819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Cma06g01265 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Cma06g01265 447 SUPERFAMILY Pectin lyase-like 73 442 IPR011050 -
Cma06g01265 447 PANTHER PECTATE LYASE 13 444 - -
Cma06g01265 447 Pfam Pectate lyase 184 362 IPR002022 -
Cma06g01265 447 PANTHER PECTATE LYASE 18-RELATED 13 444 IPR045032 GO:0030570
Cma06g01265 447 SMART amb_all 173 370 IPR002022 -
Cma06g01265 447 Gene3D - 98 440 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01265 Cma17g00116 CCT
Cma06g01265 Cma08g01035 CCT
Cma06g01265 Cma08g01035 ECH
Cma06g01265 Cma17g00116 ECH
Cma06g01265 Cma14g01872 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01265 Cma-Chr6:8417871 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma19g00136 Cma-Chr19:853549 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma02g01698 Cma-Chr2:9553186 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma06g01265 Cma-Chr6:8417871 Cma08g01035 Cma-Chr8:6481057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01265 K01728 - csv:101218188 840.106