Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01265 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGACGTCGAGGCTCTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATACGCAATGCCACGGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGCAACAGAATCGGAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGATGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTATCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGCAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACTAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCTTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG | 1344 | 47.47 | MAMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPISPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8417871 | 8422489 | + | CmaCh06G012650.1 | Cma06g01265 | 296819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 121 | 138 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 145 | 170 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 181 | 197 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 245 | 266 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 325 | 344 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 347 | 366 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 389 | 413 | IPR018082 | - | |
Cma06g01265 | 447 | PRINTS | Pollen allergen Amb family signature | 418 | 441 | IPR018082 | - | |
Cma06g01265 | 447 | SUPERFAMILY | Pectin lyase-like | 73 | 442 | IPR011050 | - | |
Cma06g01265 | 447 | PANTHER | PECTATE LYASE | 13 | 444 | - | - | |
Cma06g01265 | 447 | Pfam | Pectate lyase | 184 | 362 | IPR002022 | - | |
Cma06g01265 | 447 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 444 | IPR045032 | GO:0030570 | |
Cma06g01265 | 447 | SMART | amb_all | 173 | 370 | IPR002022 | - | |
Cma06g01265 | 447 | Gene3D | - | 98 | 440 | IPR012334 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01265 | Cma17g00116 | CCT | |
Cma06g01265 | Cma08g01035 | CCT | |
Cma06g01265 | Cma08g01035 | ECH | |
Cma06g01265 | Cma17g00116 | ECH | |
Cma06g01265 | Cma14g01872 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01265 | Cma-Chr6:8417871 | Cma13g00770 | Cma-Chr13:6648875 | 0 | dispersed | |
Cma14g01872 | Cma-Chr14:13264747 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma19g00136 | Cma-Chr19:853549 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma02g01698 | Cma-Chr2:9553186 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma06g01265 | Cma-Chr6:8417871 | Cma08g01035 | Cma-Chr8:6481057 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01265 | K01728 | - | csv:101218188 | 840.106 |