Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01268 ATGGAGAGAAGTAGGTCAAACAGCGATTTGCAGAGCATTATCGATGCCATTTCGTCGTCCGATGTCGTCGAGAGTCGTATTCAGCTGCTCAAGAAACTGGAGGATTTGGATTTATCTTGTAAATCAGAGTTGATTTCATTAGTCGAAAGCCTTACAGTATCCGCTCTGCGATTCTTTTCATTTTTAATGCTTTGTCTTTCGTCGGTGATACTATTTGAATACGAGGCATCGGCATTTAACTTTCACAGCTGCATAACGATACTACTAGTGGCTGTAAAACGTATAGAGAAGGACAAAGCCGATTGTCTAGGACAGTTTCTCACACTCGAAGTTAAGGCAAGTGTCTGGTGTAGAAAGCATCTAAAGATGACGCTCATGTCAATCCAGGAGTCACAGGAAGAAGAGCATTCCAACCTGTTTTTTCAGGTGCTTCTTTTGGATGCAGTGAAATTTTCTGCTGCCATTTTTTCAGCTTTGGCAAGATATCCTCTTTCGGAAGATAAGGCGTTGATGAATATGGTTGAGAATTTCATATTGGAACAGCTGAATTTAATGAATGAATTGGTTTCCGAAATTCAGAGGATTCGTGAATTTGGCCCAGATATATTGAAAGCTGTGCAGATGGTCATTGATGCGATGATAAAATTTTGTGAAGTTCACTCTCAAGCCCTATATCGAGGGTTCTCTGGTGAAGACTTTGATTTAACCAGCAGTGCTGTTAACCATGTCATCAACGTGCATAAGTATATAATTGAGAAATTATGCGAACTGGGCACCATTGCTGCCAAAGGTGGTGGAGGATTGGTGACAATTCTCAACGTGTCATGGAAAGGAGTGTTTACCTTGCTTCAACTTGGGAATGGGGTGTTAGCATCAAAGGTGAACATAGCAGGCATTATTCTAAATCTAGTTTCACTTGTTATGGAGCCTCTGAAATGTGCATCAGCCACTTGGTCTTCTGTAACAAATGAAGCTGTCTCTGCAAGTGAAGCCAGACGGATATTTCTTCCAGTTAAATTTTTCTTGATTAATGCTGTGAAAATATCATGCCTCTATCCTTGCCAGGCGTATCTAGTACATAAGGAGATTATTCTTTGTGTTCTTACGATCTCGACATATAAAGTTTCGCTAAGCAATGAAAAGTTACTGGGAACTGTAGCTGAAGCAATCACTGAACTTTTGGAGACAACGTGCTTGGATTTGGTCAAGTGTATTCTAAATACCACCGATCTAAAACAAGACCTGAAACTTGGGATTATGGATTTGTTATTCACGAGTGAAAGGTGTTCTCATCCAGATGGAGATCCCAGCAATTGTTTTAGGATTGATCCAATGAATGAAATTTTTAACACTAATTGTGAAGACATGAAGGATGCCAAAACCTTATTGCTTGGTCGCATTAATTTTCTACTTAATCTGTTGAGGCATTCTTTCGATCTCAGTGATGATACAAAACTACTGATCACGACAAAACTCGATGGGCTCTTGGACATTTTAGTTCAAGAAGATGTATATGCATCAGTTCTTCTCCTGCAAGTTCCTTTCTTGTATTTCTCTGGAAAAACTACAGAGCTAAAATGGCAGCCTCTGTTCTCTTCTCTGGTGCATGCATTGAAGACTTTCATGGTTGCAGTCTCCTCAAGCTGTGCTTGGCTGGAACTGCAATCCTTCTTACTTGACAATCTCTGGCATCCTCATTTTCTTTGTTGGGACATTGTTATGGAACTGTGGTGCTTTATGCTGCGCTATGCAGATGATGGGCTGGTGAATGGTGTCATCTCTAATTTTTTTTCAGTAATGAAGTTTTTGGCATCATCAGAACTAGTTCTTGTTCACAGTTCTGCATTGAGAAAAATGGCTAGGTGTATAACGATGCTACTTACATATGGTGCACATTCTAAACTAAATGAGATTTGTGAGTCTATTTTTATTCAGGACAAATCTCGGTCATCGACAGTGATATGGGCTGCCTTGATCTTGGAAGGCTTTCCCCTAAACTTACTCTCTGGGAAGATTAAAAATATTGCTATTCAGAGTATGATTCACGATTACTTGAATTTCATTGGAAGTTTTGACGAGACTTCAATGTTAGCTCTCTCTTCTAGGGTAATTGGGCTGCCAGTATTTTCTGCATCTACTACAATCCAATCCATCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTATCCGTAGCTACAAGCTTTCTGGAGTAGAAAAAGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGGGATCATCTCGTGTATGAAACATCTTTACGCATGTAATGAGATGGAGGAGGTCATCTTGGAACTGGAAAAGCTTTTTATCTCAGGACCCACGGCCTCAGATGCTCTGTTATATGAATGTAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGACAGAAACCGAAGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTGTATCACATGTTATTTAAAGAGCGGCATTGGGCATTTATACATTTGGGGCTAACAGCTTTTGGATATTATGCCGCACGTACTTCTTGTGATGAGCTGTGGAGGTTTGTGCCACAGAATGCAGCTCTTTCGTACGATTTAGAATCAGGAAAACATGTAAATGAAGAAGGGTTTATGTTAGAGTTCAAAATATTTCTTGAGAAGGAAATGGCTCTCCTCACAGTAACACCGAGCGCAGAGCAGCTATTACTGCTTATGAAAGAAGGGCTACTGTTAAAAGATAAGTTCAATACGTTACTAAAATCAAGTGGAAAGGGTATCGAATGTAAGAGCATGGAGATTGATGAAGGACCATCTAGCAGGAAAAGAAAGCTTCCTGAGGGGATCAGCAAGGGAATGGAATTGCTAAAGAATGGATTAAAGTTTATGCGCCAGGGTCTCTCACTGTTGGAGGCAAATCATGTCGATTCCAGAGAACTTCATAACAAGCTTTTGAGTCACTTTTCTGGCCTTGAAGATGAAATAGATCGTCTAGACAGCCAGGCTTTCAAACCTGAAAATGTCATCGGAGATCTCGAAGATTTTCAGGAGGTGGTTTCAGTGGACCCAATCAGTTCAGATCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAATGGCTTCACAAACAACTCCTCACTGCCTCTGGTGATATGGTGCGCATCCAAAGACAGTGATATCGGCGGGCGTGCGCTACAGGAGCACGATGATTTCAGTTGGCTCGTCAAGACCAACTTCTGGATTACTACTACCTCACAATTCTCATGCACTGTCAAATTGGACCGCACAAGGAAGAGTTTCGATGCATTTAAGGTACCAAGAGATATCTACCGCTGTAGTGCTTTCAGAAAATGCTCTTGGTTGGTTATGGAAGATGGATTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGAGTTCTCGTGGTAA 3462 40.73 MERSRSNSDLQSIIDAISSSDVVESRIQLLKKLEDLDLSCKSELISLVESLTVSALRFFSFLMLCLSSVILFEYEASAFNFHSCITILLVAVKRIEKDKADCLGQFLTLEVKASVWCRKHLKMTLMSIQESQEEEHSNLFFQVLLLDAVKFSAAIFSALARYPLSEDKALMNMVENFILEQLNLMNELVSEIQRIREFGPDILKAVQMVIDAMIKFCEVHSQALYRGFSGEDFDLTSSAVNHVINVHKYIIEKLCELGTIAAKGGGGLVTILNVSWKGVFTLLQLGNGVLASKVNIAGIILNLVSLVMEPLKCASATWSSVTNEAVSASEARRIFLPVKFFLINAVKISCLYPCQAYLVHKEIILCVLTISTYKVSLSNEKLLGTVAEAITELLETTCLDLVKCILNTTDLKQDLKLGIMDLLFTSERCSHPDGDPSNCFRIDPMNEIFNTNCEDMKDAKTLLLGRINFLLNLLRHSFDLSDDTKLLITTKLDGLLDILVQEDVYASVLLLQVPFLYFSGKTTELKWQPLFSSLVHALKTFMVAVSSSCAWLELQSFLLDNLWHPHFLCWDIVMELWCFMLRYADDGLVNGVISNFFSVMKFLASSELVLVHSSALRKMARCITMLLTYGAHSKLNEICESIFIQDKSRSSTVIWAALILEGFPLNLLSGKIKNIAIQSMIHDYLNFIGSFDETSMLALSSRVIGLPVFSASTTIQSIKLSTSDIDVRTLKFLLALIRSYKLSGVEKVKGFCRKLISETLGIISCMKHLYACNEMEEVILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMTETEDNAKSCAVWELYHMLFKERHWAFIHLGLTAFGYYAARTSCDELWRFVPQNAALSYDLESGKHVNEEGFMLEFKIFLEKEMALLTVTPSAEQLLLLMKEGLLLKDKFNTLLKSSGKGIECKSMEIDEGPSSRKRKLPEGISKGMELLKNGLKFMRQGLSLLEANHVDSRELHNKLLSHFSGLEDEIDRLDSQAFKPENVIGDLEDFQEVVSVDPISSDQLYGIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWLVKTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSAFRKCSWLVMEDGFYFSDDEVNWKKEFSW 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8434863 8442960 + CmaCh06G012680.1 Cma06g01268 296822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01268 1153 Pfam Domain of unknown function (DUF4487) 269 863 IPR027902 -
Cma06g01268 1153 PANTHER HOLLIDAY JUNCTION RESOLVASE 7 1010 - -
Cma06g01268 1153 Pfam Plant self-incompatibility protein S1 1046 1153 IPR010264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01268 - - - mcha:111016053 1578.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01268 Cma-Chr6:8434863 Cma17g01228 Cma-Chr17:8455933 8.50E-10 dispersed
Cma14g01867 Cma-Chr14:13241842 Cma06g01268 Cma-Chr6:8434863 1.14E-75 wgd
Cma02g01703 Cma-Chr2:9588583 Cma06g01268 Cma-Chr6:8434863 1.65E-08 wgd
Cma06g01268 Cma-Chr6:8434863 Cma08g01037 Cma-Chr8:6503578 1.53E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g841 . Blo12g00129 Bda03g01112 . Bpe04g01057 . Bma04g01040 . . . Cma06g01268 . . . . Cpe08g00379 . Bhi01g00007 . . . . . . . . . . . . . . . . . Lsi05g01807 . . Cme06g00414 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00376 . . Cco05g0415 Clacu05g0405 . . . Csa03g01133 Chy06g00399 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009748 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01268 Cma_Chr06 FPKM 1.474057 1.729185 0.489069 0.644547 3.684052 4.101064 4.365163 0.098406 0.054866 0.150295