Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01273 ATGAAACGAAATGAAGGCGACGAATCCAATTATCCGTCGGTGGGATTAGAGAGAGCGATGAATTCGAAGCAAAAAGAAGACGAAGAGCAGCGACGGCGATGGGGAGCTAGAACGTGGTCTACACTCGCCGCCGTGCGTAGCCGATCGCCGCTCATCCAATGCATCACCAACTTTGTTTCGATGGATTTGGTGGCAAATACTCTTTTGTCTGCTGGTGCATCCCCGGCCATGCTTCATTCTATCGAGGAGTTGCCGGATTTCACTCCCAACGCTGATGCTCTTTGTATTAACGTCGGCACGCTTTCCGCCGCCTGGTTGCCTGCCATGAAGTTTGCCGCTGAACTGGCGTTGAAGGCCGGGAAGCCTTGGGTTCTTGATCCGGTTGCTGCTGGAGCTTCTAAGTTTCGGATGATGGCTTGTTTGGAGCTTATGCAGTTGAAGCCCACCGTTGTTAGAGGGAATGGATCGGAAATAATCGCGTTGTCTAAAGCTTCCACGGAGTCCAGTATGGGCGTGGATAGCTCCCATGAGTCAACTGATGCTGTAGAAGCTGCTAAATCATTAGCTCAAAACAGTGGAGCCATAGTAGCAGTATCAGGAGCCGTGGACATAGTTACAGACGGGAAGCAAGTTATTGGCGCTCATAATGGAGTGGCCATGATGCAAAAGATTACAGCAACAGGATGTTCAGTGACAGCTCTTATTGCTGCCTTCCTTGCTGTTGATCAACTTCATGCTTTGGAAACAACAGCTTCAGCATTATCGATCTTTGGAATTGCGGGCGAGATGGGAATGGATGCAGCAAAGGGCCCTGCATCACTACGAACTCATTTGATTGATTCGCTATATGGGCTCGATGAAGCTGCTGTAATCTCACGAGTCAAGATCGCCAGCTTGTGA 900 49.78 MKRNEGDESNYPSVGLERAMNSKQKEDEEQRRRWGARTWSTLAAVRSRSPLIQCITNFVSMDLVANTLLSAGASPAMLHSIEELPDFTPNADALCINVGTLSAAWLPAMKFAAELALKAGKPWVLDPVAAGASKFRMMACLELMQLKPTVVRGNGSEIIALSKASTESSMGVDSSHESTDAVEAAKSLAQNSGAIVAVSGAVDIVTDGKQVIGAHNGVAMMQKITATGCSVTALIAAFLAVDQLHALETTASALSIFGIAGEMGMDAAKGPASLRTHLIDSLYGLDEAAVISRVKIASL 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8479400 8480848 + CmaCh06G012730.1 Cma06g01273 296827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01273 299 Hamap Hydroxyethylthiazole kinase [thiM]. 44 291 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 195 212 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 50 57 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 120 137 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 150 164 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 94 102 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 PRINTS Hydroxyethylthiazole kinase family signature 63 84 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 SUPERFAMILY Ribokinase-like 35 295 IPR029056 -
Cma06g01273 299 PIRSF Thz_kinase 36 299 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 MobiDBLite consensus disorder prediction 1 33 - -
Cma06g01273 299 Gene3D - 19 297 IPR029056 -
Cma06g01273 299 CDD THZ_kinase 42 283 IPR000417 GO:0004417|GO:0009228
Cma06g01273 299 Pfam Hydroxyethylthiazole kinase family 42 286 IPR000417 GO:0004417|GO:0009228
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01273 K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] - csv:101219530 495.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g834 . . . . . . . . . . Cma06g01273 . Car06g01094 . . . . Bhi01g00017 . . . . . . . . . . . . . . Cone15ag0225 . . Lsi05g01801 . . Cme06g00419 Blo02g00635 . . . . . Bma02g00740 . . Cmo06g01281 . . . . . . . . . . . . . . Cla05g00381 Cam05g0414 Cec05g0419 Cco05g0419 Clacu05g0410 Cmu05g0393 Cre05g0455 . Csa03g01138 Chy06g00404 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012500 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01273 Cma_Chr06 FPKM 5.468716 6.031901 10.958323 10.824576 8.63196 9.026064 7.317333 16.949266 14.466763 14.224629