Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01275 ATGTCTTTCCTCGAAGAATTTCAAGCCAATCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCGTGATTTAGATCAAAGTTTGCAAGGGCTAGTGAAACAGAATGAGCAACGATGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGAAATATTACTCCTGATACTTCACTCATCCGATTCTCTGACGAAGCTCTTGATGAGCAGAAGCATAGCATTAGAATTGCCGATGAAAAGGTTGCCCTTGCCGTTCAGGCATATGATTTGGTAGACACTCACATACAACAGCTTGACCAGTATTTGAGGAATTTTGATGAAAAGCTTCGTCATGAAAGAGGGAGTGCTGCTGCGAGTGGGTTACCAGCTTCTAGTCTGGATGGTAGTACAAAATCTGGACGGGGAACAGAAGGTGGTAGAGGAGGGCGTAAAAAAACCCGGCATGGCCAGACTGCGGCTGCAGCTGCTGCAACAGAAGCGTCAACTGCTGCAACTCTCACAGGAATGGAACTCGAATTACCGGTTGATCCAAACGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAACCCTAATTGCAAGATCGAATGGTTTCATTTTGGCTGTGTTGGTCTAAAAGAACAACCGAAAGGAAAATGGTACTGTTCAGATTGCGCGGGCTCGAAAGGTCGCCGAAAAGGAAGATAA 729 44.99 MSFLEEFQANLESLPNILQKKYALLRDLDQSLQGLVKQNEQRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLRNFDEKLRHERGSAAASGLPASSLDGSTKSGRGTEGGRGGRKKTRHGQTAAAAAATEASTAATLTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSDCAGSKGRRKGR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8491777 8495281 + CmaCh06G012750.1 Cma06g01275 296829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01275 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 236 IPR013083 -
Cma06g01275 242 Gene3D - 2 108 - -
Cma06g01275 242 CDD PHD_Yng1p_like 188 233 - -
Cma06g01275 242 SMART PHD_3 188 233 IPR001965 -
Cma06g01275 242 PANTHER INHIBITOR OF GROWTH PROTEIN 4 2 165 - -
Cma06g01275 242 PANTHER INHIBITOR OF GROWTH PROTEIN 4 149 239 - -
Cma06g01275 242 SUPERFAMILY FYVE/PHD zinc finger 175 233 IPR011011 -
Cma06g01275 242 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Cma06g01275 242 Pfam Inhibitor of growth proteins N-terminal histone-binding 3 111 IPR024610 -
Cma06g01275 242 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Cma06g01275 242 MobiDBLite consensus disorder prediction 119 163 - -
Cma06g01275 242 CDD ING_plant 11 108 - -
Cma06g01275 242 PANTHER INHIBITOR OF GROWTH PROTEIN 149 239 IPR028651 -
Cma06g01275 242 PANTHER INHIBITOR OF GROWTH PROTEIN 2 165 IPR028651 -
Cma06g01275 242 SMART ING_2 3 111 IPR024610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01275 K11346 ING4; inhibitor of growth protein 4 - csv:101220012 420.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00246 Cma-Chr3:3538833 Cma06g01275 Cma-Chr6:8491777 3.35E-34 dispersed
Cma06g01275 Cma-Chr6:8491777 Cma07g01170 Cma-Chr7:6416460 9.88E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01275 Cma_Chr06 FPKM 4.799104 4.526101 7.279446 8.908195 6.637957 5.012677 5.905137 6.709597 6.637399 7.257415