Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01277 ATGGCAGAAGTGAAGCTCCATGGAACTTGGCCGAGCCCTTTCAGTTACAGAGTGATTTGGGCGCTGAAGCTCAAAGGTATTCCCTACGAGTACGTAGAAGAAGATCTCTCCAACAAGAGCCCTCTGCTTTTGCACTACAATCCGGTTCACAAGAAGATTCCGGTGCTCGTCCATGGCGGAAAACCGATCTGCGAATCCATGATCATCCTCGAGTACATCGACGAAACTTGGCCGGAGAAGCCGCTGCTTCCGTCGGATCCTTTTGAGAGAGCGACGGCGAGATTCTGGATAAAATTCATCGAGGATAAGGGCCCTGCGGTTTTTATGATATTCCGTGCGAAGAGTGATGAAGAACAGGAGAATGCCAAGAAGCAGAGCTTAGAGATGCTGAGAACCGTCGAGGAATGGGGATTCCGCGGTGGCGATGGCAGAGAGAGGAAGTTCTTCGGCGGAGATGAGATCGGAATGACGGATTTGGCGTTCGGGTGGATTGCGCACTGGATAGGAGTGATTGAAGAAGTGGTGAACGTCAAATTGCTGGACGCCAACGAGTTCCCTAAGGTGTATGCTTGGACTGAAAGATTCAAGGATGCGGCGGTGATCAGAGATAATCTACCGGACCGAAACCTAATGGCAGCAGCTTTCCGGCGACGGAGGGAACAATTGCTCCAATCCACTTAA 681 51.1 MAEVKLHGTWPSPFSYRVIWALKLKGIPYEYVEEDLSNKSPLLLHYNPVHKKIPVLVHGGKPICESMIILEYIDETWPEKPLLPSDPFERATARFWIKFIEDKGPAVFMIFRAKSDEEQENAKKQSLEMLRTVEEWGFRGGDGRERKFFGGDEIGMTDLAFGWIAHWIGVIEEVVNVKLLDANEFPKVYAWTERFKDAAVIRDNLPDRNLMAAAFRRRREQLLQST 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8499592 8500393 - CmaCh06G012770.1 Cma06g01277 296831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01277 226 CDD GST_C_Tau 87 218 IPR045074 GO:0004364|GO:0006749
Cma06g01277 226 CDD GST_N_Tau 4 77 - -
Cma06g01277 226 Gene3D - 86 226 - -
Cma06g01277 226 Gene3D Glutaredoxin 1 85 - -
Cma06g01277 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 215 IPR010987 -
Cma06g01277 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cma06g01277 226 PANTHER GLUTATHIONE S-TRANSFERASE 1 220 - -
Cma06g01277 226 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cma06g01277 226 SFLD Main.3: Omega- and Tau-like 1 224 IPR045073 -
Cma06g01277 226 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Cma06g01277 226 SUPERFAMILY GST C-terminal domain-like 75 220 IPR036282 -
Cma06g01277 226 SFLD Glutathione Transferase (cytosolic) 1 224 IPR040079 -
Cma06g01277 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 220 IPR045073 -
Cma06g01277 226 Pfam Glutathione S-transferase, C-terminal domain 110 195 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01277 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207387 367.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01277 Cma-Chr6:8499592 Cma14g01862 Cma-Chr14:13214607 8.35E-07 dispersed
Cma16g00464 Cma-Chr16:2326120 Cma06g01277 Cma-Chr6:8499592 2.67E-50 dispersed
Cma06g01277 Cma-Chr6:8499592 Cma06g01278 Cma-Chr6:8501349 3.60E-89 tandem
Cma06g01135 Cma-Chr6:7652425 Cma06g01277 Cma-Chr6:8499592 2.42E-15 transposed
Cma14g01861 Cma-Chr14:13213235 Cma06g01277 Cma-Chr6:8499592 8.61E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
Vvi15g85 . . . . . . . . . . Cma06g01277 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 Cla05g00265 Cam05g0289 Cec05g0289 Cco05g0297 Clacu05g0286 Cmu05g0272 Cre05g0336 . . . . Lsi05g01929 . . Cme06g00291 . . . . . . . . . Cmo06g01186 . . . . . . . . . . . . . . . . . . . . . . Csa03g00999 Chy06g00270 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01277 Cma_Chr06 FPKM 314.07489 320.450409 2.581762 3.150516 2.378252 2.426107 2.012862 16.016432 16.13504 13.067287