Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01278 ATGGGAGGAGTGAAGCTCCATGGAAGTTGGGCGAGTCCTTTCAGTAACAGAGTCGTCTGGGCGCTGGAACTCAAAGGCATACCCTACGAGTTCGTACAAGAAGATATGACGAAGAAAAGCCCTCTGCTCCTTCACTACAATCCCGTTTGCAAGAAGATTCCGGTGCTCGTCCATGGCGAAAAGCCGATCTGCGAATCCTCCATCATCCTTGAGTACATCGACGAGACCTGGCCGCAAAAGCCTCTGCTACCGATCGATCCTCTCGACAGAGCCACCGCTCGGTTCTGGATCAAATTCATAGAGGACAAGGAAGCAACGATGAGGAGGATTTTTGTAGCGAGAGGGGAAGATAAAGAGGAGGCGAGGAGAGCGAGCTTGGAAGTGCTGAGGACGGTCGAGGAGAGGGGCCTCGGCGGCGGCGGGAAGTTCTTCGGAGGAGATGCGATTAATATGGTGGATTTGACGTACGGATGGATCGCAGTGTGGATGAAGGTTTTGGAAGAAGTATTGGATATGAAGCTGATTGAAGGCCCTGAGTTCCCTCGCCTTCAAGCATGGGCGGAGAGTTTCCGAACCGCCGCCGTCATCAGAGATCACATTCCCGACCACCAAAAAATGGTGCTACATTTACGGCGCCGCCGTGAGGAACTGCTTCTGCCACCAAACTAG 669 53.21 MGGVKLHGSWASPFSNRVVWALELKGIPYEFVQEDMTKKSPLLLHYNPVCKKIPVLVHGEKPICESSIILEYIDETWPQKPLLPIDPLDRATARFWIKFIEDKEATMRRIFVARGEDKEEARRASLEVLRTVEERGLGGGGKFFGGDAINMVDLTYGWIAVWMKVLEEVLDMKLIEGPEFPRLQAWAESFRTAAVIRDHIPDHQKMVLHLRRRREELLLPPN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8501349 8502406 + CmaCh06G012780.1 Cma06g01278 296832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01278 222 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Cma06g01278 222 CDD GST_N_Tau 4 77 - -
Cma06g01278 222 SFLD Glutathione Transferase (cytosolic) 2 218 IPR040079 -
Cma06g01278 222 Gene3D - 86 219 - -
Cma06g01278 222 Gene3D Glutaredoxin 2 85 - -
Cma06g01278 222 SFLD Main.3: Omega- and Tau-like 2 218 IPR045073 -
Cma06g01278 222 PANTHER GLUTATHIONE S-TRANSFERASE 1 214 - -
Cma06g01278 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 217 IPR010987 -
Cma06g01278 222 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cma06g01278 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cma06g01278 222 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Cma06g01278 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 214 IPR045073 -
Cma06g01278 222 CDD GST_C_Tau 87 209 IPR045074 GO:0004364|GO:0006749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01278 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01278 Cma-Chr6:8501349 Cma14g01862 Cma-Chr14:13214607 7.53E-11 dispersed
Cma14g01863 Cma-Chr14:13218401 Cma06g01278 Cma-Chr6:8501349 4.37E-10 dispersed
Cma06g01277 Cma-Chr6:8499592 Cma06g01278 Cma-Chr6:8501349 3.60E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01278 Cma_Chr06 FPKM 49.537106 51.717384 12.934392 11.855989 15.149157 12.584983 15.403759 45.645481 44.450466 41.320175