Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01281 ATGACTCATAACAGTACTTGTATCAGTATCCCACCATTGGCTCACACCATTGATGATGGCTTCTTTGATCATCGGTGTATATGGGTCAATGGACCGGTGATTGTCGGAGCAGGACCATCTGGGTTGTCTGTAGCTGCAGCTCTCAAACAACAAGGCGTCCCATTCGTTGTCGTTGACCGAGCTGACTGCATTGCCTCTCTTTGGCAACACAGGACCTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAACTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCTTCCAAGTTTCAGTTCATTTCCTACTTGGAATCCTATGCCAACCATTTTGATATCACCCCACGTTTCAATGAGACTGTGCAGTCAGCCAAGTATGATGAAACTTTTGGTCTGTGGCGAGTCAAAACCGTTTCGTTGAGTCCAAAGCCAACCGAGGTTGAGTACATTTGTCGATGGCTGGTCGTCGCCACCGGCGAGAATTCTGAGAAGGTTGTGCCAGAGTTTGAAGGGATAGAGGAGTTTGGCGGCCATGTTATGCATGCTTGTGACTACAAATCTGGCGAGGCTTACCATGGCAAACGGGTGCTTGTTGTCGGATGTGGGAACTCCGGCATGGAAATCTCACTTGATCTTTGTAACCATGACGCCAAGCCATCAATGGTGGTACGAAGTTCGGTTCACATATTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTTGCAATTTCCCTGATGAAATGGCTGCCACTTCATATGGTCGACAAGATGCTCCTGATCATTGCCAGACTTGTTCTTGGGAACACTGAGAAGTATGGACTTAAAAGGCCATCTACAGGGCCTTTGCAGCTGAAAAACGCTGCTGGGAAGACACCGGTGTTAGATATTGGAGCGCTACAGAAGATAAGAGCAGGCGAGATCAAGGTGGTGACCGGAATTAAAAAATTCCGACAAGGTGCGGTGGAGCTGGTCAATGGAGAAGTTCTAGAGATTGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCAGGACTCTACGCGGTTGGGTTCACAAGAAGAGGCCTATCAGGAGCTTCATTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGTTGGAAAGAAGAAACAAAACAGAAGAGAAAATCTGTGGCAGCTCGCCATAGAAGATGCATTTCACATTTCTAA 1293 46.56 MTHNSTCISIPPLAHTIDDGFFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDITPRFNETVQSAKYDETFGLWRVKTVSLSPKPTEVEYICRWLVVATGENSEKVVPEFEGIEEFGGHVMHACDYKSGEAYHGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHILPREILGKSTFEVAISLMKWLPLHMVDKMLLIIARLVLGNTEKYGLKRPSTGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVTGIKKFRQGAVELVNGEVLEIDSVILATGYRSNVPSWLKENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRRGLSGASLDAINVAQDIAKSWKEETKQKRKSVAARHRRCISHF 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8507093 8508778 - CmaCh06G012810.1 Cma06g01281 296835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01281 430 Gene3D - 32 414 IPR036188 -
Cma06g01281 430 Pfam Flavin-binding monooxygenase-like 34 351 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cma06g01281 430 PRINTS Pyridine nucleotide disulphide reductase class-II signature 31 53 - -
Cma06g01281 430 PRINTS Pyridine nucleotide disulphide reductase class-II signature 196 220 - -
Cma06g01281 430 SUPERFAMILY FAD/NAD(P)-binding domain 200 413 IPR036188 -
Cma06g01281 430 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 16 428 - -
Cma06g01281 430 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 16 428 - -
Cma06g01281 430 SUPERFAMILY FAD/NAD(P)-binding domain 33 234 IPR036188 -
Cma06g01281 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 32 51 - -
Cma06g01281 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Cma06g01281 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01281 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221268 839.336
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01281 Cma14g01858 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00655 Cma-Chr5:3341907 Cma06g01281 Cma-Chr6:8507093 2.35E-176 dispersed
Cma06g01281 Cma-Chr6:8507093 Cma17g01359 Cma-Chr17:9090527 0 dispersed
Cma20g00721 Cma-Chr20:3333196 Cma06g01281 Cma-Chr6:8507093 3.19E-09 dispersed
Cma14g01858 Cma-Chr14:13202500 Cma06g01281 Cma-Chr6:8507093 0 wgd
Cma19g00129 Cma-Chr19:776962 Cma06g01281 Cma-Chr6:8507093 0 wgd
Cma02g01707 Cma-Chr2:9614717 Cma06g01281 Cma-Chr6:8507093 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01281 Cma_Chr06 FPKM 0.266048 0.995997 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cma06g01281 Cma_Chr00 FPKM 0.20331 0.532169 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0