Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01282 ATGGAAGACCCTGCTATTTATTCGGCTGGTCAAGTAAATCTAGCGGTTGGGTGTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGATAGATGGGGAAGTAGTGGCAGTTAATGGTCAAGATATCAGAGTACTCTGTTCATCAGGAACTACTGTTGAGGCCAAATCATCAAATGCCTATCCAAAGGATCCTGAATTTCCATCATGTGGTGTGGATGATATGACAAAACTAGCTTATTTACACGAGCCAGGACTGCTACAGAACTTGAAATGTCGTTATGATGTTAATGAAATTTATACCTATACTGGGGGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATGGCATAATGCAACAATATAAAGGGGCGGATTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCATATAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACGGAGAGTACAAAGATGCTTATGCGCTATCTTGCCCATGTTGGAGGGAGAGATGGAGGGAAGGCTGCAACTGGTGAACGCTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCCAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGACCGAAGTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCATCAACAGAGGAAGTTGAAAAGTATAAGTTAGGGAATCCAAGAACATTCCATTATCTTAATCAATCTAATTGCTATGAACTTGATGGACTGGACGAATCCAAGGAATATACTTCTACTAGAGAAGCTATGGATGTCGTTGGAATAAGTACAGCTGAGCAGGATGCTATATTTCGAGTGGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTACAAAGGGGAAGGATGCGGATTCCTCTGAACCTAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCAGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTCGATACAGTATCTGCAACTCTTAGTAGGGATGCTTTGGCAAAAATCGTATATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCGTGATTCAAAACACTTAATCGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATTAACCTGACAAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGACGAATATACAAAAGAAGAAATTAACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCGCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGAGACTTTTGCTCAGAAACTATATCAAACTTTTAGGGACCATAAGCGATTTAGTAAGCCTAAATTATCACGAACTGACTTCACAATTTGTCATTATGCTGGGGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCACTGTTGGGTGCTTCTAAGTGCTCCTTTGTTGCAGGGCTATTCCCCCCTTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGAACTAGATTTAAGCAACAACTTCAAACTTTGCTCGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCATCCATCTTTGAGAATAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGATGTTTTGAAGGGGAGCTCTGATGAAGCCAATGCGTGTAAGAAGCTTTTGCAGAAAGTTAACCTTAATGGGTATCAGATTGGTAAAACCAAAGTGTTTCTTAGGGCTGGTCAAATGGCACAATTAGATGGCTGCCGAACTGAGGTCTTGGGAAGATCTGCTAGTGTTATCCAAAGGAAAGTTCGCTCATATTTGGAACGGAATCGTTTTATTTCGTTGCGGTTGGCTGCTATACAAATTCAAGCACTTTGTAGAGGGGAAGTTGCACGCCAGCAGTATGAAAACATCAGAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTGTTCTGCCCGAAGATCCTATAAAAGATTGCGCTCTTCAGCTGTAGCTATTCAGGCTGGTATCCATGGCATGGTTGCTCGTAAAGAGCTCAAGTTCAGGAGGGATACAAGAGCTGCAATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCCATACGCATTATTTAAGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAGATATGTTGGAAAAGCAAGTGGTGTGTGCAGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAGATATGTTGGAAAAGCAAGTGGAAGAACTAACATTGAGATTGGAGCAAGAGAAACAAATGAGGGCTGACATGGAGGATGCCAAGACTCAAGAAAACACAAAATTGAAGTCTGCTTTGGAAGAAATACAAACTCAATTTCAGGAAACTAAAGCACTGCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAAATCCGTGAAGCTTCAAAGAAAGTAGTTGAGGAAGTCCCAATAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAATAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGCGAAGCAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGCGAAGCAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAGTAGCTGCACAGAAAGTAGTTGTGGAAGTCCCAGTCATACAGGAGGTTCCAGTTGTTGATCATGAGCTTATCAATAAGCTAACTACTGAAAATGAAGAACTTAAGGCTCTTGTTAGTTCTTTGGAAAGTAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATAGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAGTTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAGCACTGCAAAAGCCTCCTTCAAGAAAAATGTCTGGACATATAACAATGCAGCCTTTGGAGAATGGCCACCTTGAATTATTAAGCAATGCACCATCAAAAAAGTATGGTACCGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCGAAATACTTGACACGGGATCTTGGGTACAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTCTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTATTTGATCGTCTTATTCAGATAATTGGTTCTGCAATTGAGGGGTTTCGCTCATCTTCTGCCAACCTTCCAGTTGGCACCCTTGATGTTGTACGGCAAGTTGAAGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTGAAGAAGGAACTATCGCCGTTGCTTTCAACTTGTGTCCAAGCTCCCAAAACTTCGGAAGAGAATATTGAGGAATCATCTGACGAGACAAAGAGTAGCAGCCTTCTCAATAGTTCATGGGGCAGCATCATCCATCACCTTAATCATCATCTTAGTAGATTGCAGACGAACTTCGTGCCTTCCGTTTTGGTCCAGAAGATATTCACTCAGGTTTTTTCATACATCAACGTACAGCTTTTCAATAGTCTTCTACTTCGTCAAGAGTGCTGCACGTTTAGTAACGGAGAATATGTGAAGTCAGGACTTGCTGAGTTAGAGAGTTGGTGTACCCAAGCCAAAGAAGAGTATGTCGGGTTATCTTGGGATGAGCTAAAACCAGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAATATTAAGCGTTCAGCAGCTTTATAGAATATGTACTCTTTATTGTGACGACAATTACAATACCAGAAGCGTAGCTGAAGAGGTTATTTCTAGCATGAAGGTTTTGATGCCCGAAGATTCCAATGATGAAGACAATAATTCCTTTTTGTTGGATGATAATTCCAGCATACCTTTCTCAGTCGATGACATATCCAGTTCCTTGCAAGATAAGAATTTTCAAGATATTAAGCCTCCAGCAGAACTACTTGAGAATCCGGTCTTCCAATTTTTACAGGAATAA 4758 41.38 MEDPAIYSAGQVNLAVGCLVWIEDPEVAWIDGEVVAVNGQDIRVLCSSGTTVEAKSSNAYPKDPEFPSCGVDDMTKLAYLHEPGLLQNLKCRYDVNEIYTYTGGILIAVNPFRRLPHLYDNGIMQQYKGADLGELSPHPFAIANSAYSQSILVSGESGAGKTESTKMLMRYLAHVGGRDGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDRSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCASTEEVEKYKLGNPRTFHYLNQSNCYELDGLDESKEYTSTREAMDVVGISTAEQDAIFRVVAAVLHLGNVEFTKGKDADSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDTVSATLSRDALAKIVYSRLFDWIVDKINNSIGQDRDSKHLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQDEYTKEEINWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFRDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLGASKCSFVAGLFPPLPEETSKSSKFSSIGTRFKQQLQTLLETLNATEPHYIRCVKPNNLLKPSIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSDEANACKKLLQKVNLNGYQIGKTKVFLRAGQMAQLDGCRTEVLGRSASVIQRKVRSYLERNRFISLRLAAIQIQALCRGEVARQQYENIRMEAASIKIQKYWRMCSARRSYKRLRSSAVAIQAGIHGMVARKELKFRRDTRAAIIIQSRCRQYLAHTHYLRLLRKLALSKLPKICWKSKWCVQAAKETGALQAAKDMLEKQVEELTLRLEQEKQMRADMEDAKTQENTKLKSALEEIQTQFQETKALLIEEREAAKKVVEEREAAKKVVEEIREASKKVVEEVPIAAKKVVEEVPVAAKEVVEEVPVAAKKVVEEVPIAAKEVVEEVPVAAKEVVEEVPVAAKEVVEEVPAKQVVEEVPVAAKEVVEEVPAKQVVEEVPVAAKKVVEEVPVAAQKVVVEVPVIQEVPVVDHELINKLTTENEELKALVSSLESKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQALQKPPSRKMSGHITMQPLENGHLELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTRDLGYSEGKPVAAFVIYKSLLHWRSFEAEKTSVFDRLIQIIGSAIEGFRSSSANLPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLLSTCVQAPKTSEENIEESSDETKSSSLLNSSWGSIIHHLNHHLSRLQTNFVPSVLVQKIFTQVFSYINVQLFNSLLLRQECCTFSNGEYVKSGLAELESWCTQAKEEYVGLSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYCDDNYNTRSVAEEVISSMKVLMPEDSNDEDNNSFLLDDNSSIPFSVDDISSSLQDKNFQDIKPPAELLENPVFQFLQE 1585
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 8516480 8540422 - CmaCh06G012820.1 Cma06g01282 296836
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01282 1585 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 Coils Coil 889 972 - -
Cma06g01282 1585 Coils Coil 1108 1142 - -
Cma06g01282 1585 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Cma06g01282 1585 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Cma06g01282 1585 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Cma06g01282 1585 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Cma06g01282 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 789 IPR027417 -
Cma06g01282 1585 PANTHER MYOSIN 13 1293 - -
Cma06g01282 1585 PANTHER MYOSIN 1293 1583 - -
Cma06g01282 1585 PANTHER MYOSIN-7 13 1293 - -
Cma06g01282 1585 ProSiteProfiles Dilute domain profile. 1307 1531 IPR002710 -
Cma06g01282 1585 PANTHER MYOSIN-7 1293 1583 - -
Cma06g01282 1585 Gene3D - 441 625 - -
Cma06g01282 1585 Gene3D - 737 786 - -
Cma06g01282 1585 Gene3D - 787 837 - -
Cma06g01282 1585 Coils Coil 1150 1184 - -
Cma06g01282 1585 Gene3D - 668 734 - -
Cma06g01282 1585 SMART iq_5 784 806 IPR000048 GO:0005515
Cma06g01282 1585 SMART iq_5 832 854 IPR000048 GO:0005515
Cma06g01282 1585 SMART iq_5 759 781 IPR000048 GO:0005515
Cma06g01282 1585 SMART iq_5 807 829 IPR000048 GO:0005515
Cma06g01282 1585 SMART iq_5 736 758 IPR000048 GO:0005515
Cma06g01282 1585 Gene3D - 255 312 - -
Cma06g01282 1585 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Cma06g01282 1585 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 PRINTS Myosin heavy chain signature 199 226 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 CDD MyosinXI_CBD 1233 1554 IPR037975 GO:0007015
Cma06g01282 1585 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Cma06g01282 1585 Pfam Myosin head (motor domain) 71 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 SMART DIL_2 1406 1513 IPR002710 -
Cma06g01282 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 858 IPR027417 -
Cma06g01282 1585 Pfam DIL domain 1407 1509 IPR002710 -
Cma06g01282 1585 CDD MYSc_Myo11 83 722 IPR036018 -
Cma06g01282 1585 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Cma06g01282 1585 ProSiteProfiles Myosin motor domain profile. 69 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Cma06g01282 1585 Pfam Myosin N-terminal SH3-like domain 19 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma06g01282 1585 Gene3D Kinesin motor domain 72 664 IPR036961 -
Cma06g01282 1585 ProSiteProfiles IQ motif profile. 833 861 IPR000048 GO:0005515
Cma06g01282 1585 SMART MYSc_2a 63 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01282 Cma-Chr6:8516480 Cma17g01361 Cma-Chr17:9101620 0 dispersed
Cma06g01282 Cma-Chr6:8516480 Cma08g00051 Cma-Chr8:276033 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01282 K10357 - csv:101221506 1651.72