Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01289 ATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGTCGCCGCCGGAGCCTCCCTTTTCATCACCAAGCGCTGGCTCTCTGATGCTCTCCTTGCAACCCCATCAGCCCTAATGTTTCCCATCTTGTCCGGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATATCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGCGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACGAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATTGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAGTACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGGACTTCTTTATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGTTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTAAAGGAAAACAAGCTCAGGGATCTAAGATTTTGATTGTGGGACTTGTTCTTGTTTCTTCTCGATTTTTAGGGTTTAAGGGTTTCGATCAAATGGGGACGCCCTTTCACATTCCGGTCACTGCCGCTCAGGTGGGAACGTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTTTGTTCATCAGTTTTATTCTGATGCGAGTACCATGCTTCGTGTTGATGGCCATTTCAGGGAGTCCGCCACTGCAATGCTGCAAATCCATGCTCTTGTGATGTCGCTTAGTTATACCGGGGTTGAGATCAAGACAGCACATTCATTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTTCAAATGAAGAATTTCAATCAAATGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCACTCTTATTAAGTCAGAGCAATCTTGATTCCACCTTGAATGCTCCAACCACAGCTCCAGAGACAGTGCCCAATTACTCACTGAATGGTGCAGTCCAGGCCCCGCGAGAGTTTGCAACCCCGGTTGTCAAAGAAAATGGTCACGTCGATAACTGTAAGTTTGTCGAGCAGCAACTGCAGCAAGTTCCCGAGCCAAAAAGCATTATAGAGGAAAGTACAGCAGACGTAAATTCTATCCATCAGAATGCACCAACTGTTTCACCAGATCCTTCCCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCAAACATATGCTTCAATCCTTCGAGTTGCTAAAGGACAAGATGCGCCCGCTTCCATTGCTGCTTCTCAGTATCCAGTTAGTAAGAGCACACCATCTGCTTCAGAGAAAAACTACACTCCACCGTCCACTGCCCAGCAATTAACTACAGCTCTCCAAAATAACTCCGAACGGGAACAGACAGGAGGCGAGTTCCCTTCTGTTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCACTTTGGAAAACTCAGTTCTGATGGGGTGGTTATTAGGAGCCGCAAGGATGTTGGTTTTTGCTATGCATTTGTCGAATTTGAAGACGTCACTGGCGTCCAAAACGCTATCAAGGCAGGTACTGCTCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAACGTCCCACACCAAGGAGGAAGAAGGGGTGGTAGAGGAAGAGGTAGCTATCACACAGAGTCTTCTAGGGGGCATCATTCTAGCTCTTGGAGTTACAATATGGGAGTTCGAGACGGAAGCGACCGTGAGTATATCAGACCGAGAGGCAACGGCTTCTATCGACCTACTACTCGACAGGACAAAGTGAACCACAGCCATCAAGTATCAAGAAATGGAGAAAGTCCATCAGAGTCATCATAG 2352 46.68 MLPISSLSNSPTMATVAAGASLFITKRWLSDALLATPSALMFPILSGSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEVCNELELEGRVIRVSLAKGKQAQGSKILIVGLVLVSSRFLGFKGFDQMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVDGHFRESATAMLQIHALVMSLSYTGVEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPALLLSQSNLDSTLNAPTTAPETVPNYSLNGAVQAPREFATPVVKENGHVDNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYASILRVAKGQDAPASIAASQYPVSKSTPSASEKNYTPPSTAQQLTTALQNNSEREQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGRGRGSYHTESSRGHHSSSWSYNMGVRDGSDREYIRPRGNGFYRPTTRQDKVNHSHQVSRNGESPSESS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8572392 8582822 - CmaCh06G012890.1 Cma06g01289 296843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01289 783 PANTHER OS02G0131700 PROTEIN 317 767 - -
Cma06g01289 783 MobiDBLite consensus disorder prediction 527 551 - -
Cma06g01289 783 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Cma06g01289 783 MobiDBLite consensus disorder prediction 699 783 - -
Cma06g01289 783 Gene3D - 316 441 - -
Cma06g01289 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Cma06g01289 783 CDD NTF2 319 439 IPR018222 -
Cma06g01289 783 SUPERFAMILY NTF2-like 319 438 IPR032710 -
Cma06g01289 783 Gene3D - 194 289 IPR012677 -
Cma06g01289 783 Gene3D - 594 737 IPR012677 -
Cma06g01289 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 275 IPR000504 GO:0003723
Cma06g01289 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 627 694 IPR000504 GO:0003723
Cma06g01289 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Cma06g01289 783 Gene3D - 76 193 IPR012677 -
Cma06g01289 783 SUPERFAMILY RNA-binding domain, RBD 623 729 IPR035979 GO:0003676
Cma06g01289 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Cma06g01289 783 SMART rrm1_1 204 277 IPR000504 GO:0003723
Cma06g01289 783 SMART rrm1_1 626 698 IPR000504 GO:0003723
Cma06g01289 783 SMART rrm1_1 113 186 IPR000504 GO:0003723
Cma06g01289 783 Pfam Nuclear transport factor 2 (NTF2) domain 323 437 IPR002075 -
Cma06g01289 783 ProSiteProfiles Nuclear transport factor 2 domain profile. 323 437 IPR018222 -
Cma06g01289 783 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 317 767 IPR039539 -
Cma06g01289 783 MobiDBLite consensus disorder prediction 568 622 - -
Cma06g01289 783 CDD RRM_SF 627 698 - -
Cma06g01289 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 625 702 IPR000504 GO:0003723
Cma06g01289 783 SUPERFAMILY RNA-binding domain, RBD 108 194 IPR035979 GO:0003676
Cma06g01289 783 MobiDBLite consensus disorder prediction 571 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01289 - - - cpep:111790085 1068.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01289 Cma14g01845 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01289 Cma-Chr6:8572392 Cma17g01373 Cma-Chr17:9167959 1.79E-119 dispersed
Cma16g01171 Cma-Chr16:8970857 Cma06g01289 Cma-Chr6:8572392 5.76E-08 dispersed
Cma17g00936 Cma-Chr17:7015187 Cma06g01289 Cma-Chr6:8572392 2.52E-09 dispersed
Cma14g01845 Cma-Chr14:13143826 Cma06g01289 Cma-Chr6:8572392 0 transposed
Cma14g01844 Cma-Chr14:13139202 Cma06g01289 Cma-Chr6:8572392 4.66E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01289 Cma_Chr06 FPKM 9.371614 8.842306 9.853166 9.992362 16.112202 18.375383 16.190956 8.371651 8.573256 7.92683