Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01297 ATGAACTGCTCTATCTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCTAAGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGGCACATTTTAGACTATGGGAAATGCCCTGTTACAGGCGAACCTCTTTCCATTGATGACATCGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTGGAGCAACAGTTGCATACAGCCAGACAGGAACTTAGTCATGCCTTATATCAGCATGATGCAGCCTGTCGTGTAATTGCAAGACTTAAGAAGGAACATCCAATGCTGCTGTCAATGTTAATGGCAAAAGAGGTTTTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAACTACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTTCCCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCAATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTGAGTGGTCATTCAAGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTGAGTGGTCATTCAAAGAAGGTTGCTGGATAGTAACAAGTGTCAAATTTGTCACCCGAGATGATTTTATCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTGTGGCAACCATCTGATGGCGGGAACTATAATTGTAGACACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAACAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGACCTTGCTTCAGGATTATGCCTAACCCAGGTTGCAGAGGCTTCAGGAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGACTCATCCTTGGAACCGGCACGTCAGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTTGCTAGATTTGATGGACACGTTGGGGCAGTGACAGCTATATCATTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCAATTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAATTCGGAACGGATGCAAAATACTTGGCAGTCGGATCCATGGATCGAAATCTTCGGATTTTTGGTGTGCCTGGGGAAGACGGGCCGATGGAGACATAA 1581 43.77 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKEHPMLLSMLMAKEVFNEDEELGPDGKKLRPGISATVISELTDCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSRHKCCSFWSIIWGDFIYTEWSFKEGCWIVTSVKFVTRDDFILTGSADKTVRVWQPSDGGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8601238 8609259 - CmaCh06G012970.1 Cma06g01297 296851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01297 526 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Cma06g01297 526 SUPERFAMILY WD40 repeat-like 199 515 IPR036322 GO:0005515
Cma06g01297 526 SUPERFAMILY RING/U-box 1 53 - -
Cma06g01297 526 SMART WD40_4 429 468 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 475 516 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 388 426 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 344 385 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 231 296 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 302 341 IPR001680 GO:0005515
Cma06g01297 526 SMART WD40_4 186 228 IPR001680 GO:0005515
Cma06g01297 526 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 296 IPR001680 GO:0005515
Cma06g01297 526 Pfam WD domain, G-beta repeat 478 515 IPR001680 GO:0005515
Cma06g01297 526 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Cma06g01297 526 Pfam WD domain, G-beta repeat 304 341 IPR001680 GO:0005515
Cma06g01297 526 Pfam WD domain, G-beta repeat 267 295 IPR001680 GO:0005515
Cma06g01297 526 CDD WD40 202 515 - -
Cma06g01297 526 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 435 IPR001680 GO:0005515
Cma06g01297 526 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Cma06g01297 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cma06g01297 526 Gene3D - 178 517 IPR015943 GO:0005515
Cma06g01297 526 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Cma06g01297 526 Pfam Prp19/Pso4-like 64 122 IPR013915 -
Cma06g01297 526 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 242 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cma06g01297 526 PANTHER PRE-MRNA-PROCESSING FACTOR 19 271 525 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cma06g01297 526 CDD RING-Ubox_PRP19 3 54 - -
Cma06g01297 526 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 350 IPR001680 GO:0005515
Cma06g01297 526 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01297 Cma14g01841 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01297 Cma-Chr6:8601238 Cma05g00939 Cma-Chr5:7582072 2.62E-20 dispersed
Cma14g01841 Cma-Chr14:13124755 Cma06g01297 Cma-Chr6:8601238 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01297 K10599 - csv:101204424 900.197