Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01301 ATGGCAGCTTCAATTTCTGCATCTCAGCTTCACAAACCTCTTCCCTCCTCCTTCCATGGAGGCTGGGGGTCCTCCATTTGCGGCGAAACCACTGGGATGCTCGCCAAATCGGTCCCGGAAGTGGTCCGAGTTGGAAAGCCGGTGAGATTCCGGCCAATGATGAAGAATGGAACGGAAGTGGTCCGAGTTGGAAAGCCGGTGAGATTCCGGCCAATGATGAAGAATGTTAACGAAGGGAAAGGTGTATTTGCGCCTGCCGTTGTTCTTGCTCGAAATATTATCGGAAAGAAACGTTTCAATCAGTTGAGAGGCAAGGCCATTGCGCTGCACTCACAGATTATTACGGAGTTCTGCAAATCTATTGGAGCTGATGCTAAGCAAAGACAGGGATTGATTAGGTTAGCCAAGAAGAATGGTGAAAGATCAAAATACAATCCTCTAGACGACGATCGTTCATGGAGAGTCAAGAAGAACAAAAGAAAATAG 486 47.53 MAASISASQLHKPLPSSFHGGWGSSICGETTGMLAKSVPEVVRVGKPVRFRPMMKNGTEVVRVGKPVRFRPMMKNVNEGKGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNGERSKYNPLDDDRSWRVKKNKRK 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8619681 8621475 - CmaCh06G013010.1 Cma06g01301 296855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01301 161 PANTHER PROTON GRADIENT REGULATION 5 1 59 - -
Cma06g01301 161 PANTHER PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC 1 59 IPR037497 GO:0009644|GO:0009773
Cma06g01301 161 PANTHER PROTON GRADIENT REGULATION 5 55 142 - -
Cma06g01301 161 PANTHER PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC 55 142 IPR037497 GO:0009644|GO:0009773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01301 - - - csv:101204671 202.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01301 Cma17g00146 CCT
Cma06g01301 Cma08g01064 CCT
Cma06g01301 Cma14g01839 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01301 Cma-Chr6:8619681 Cma14g01839 Cma-Chr14:13112131 7.99E-65 dispersed
Cma17g00146 Cma-Chr17:721339 Cma06g01301 Cma-Chr6:8619681 4.04E-56 wgd
Cma06g01301 Cma-Chr6:8619681 Cma08g01064 Cma-Chr8:6650732 2.54E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g770 . Blo12g00137 Bda03g01094 . . . . . Cmo08g01034 Cmo17g00145 Cma06g01301 Cma14g01839 Car06g01117 Car14g01646 . Cpe08g00353 Cpe03g01538 Bhi01g00684 . . . Hepe05g1685 . Lcy11g1698 Cla06g00692 Cam06g0742 Cec06g0749 Cco06g0760 Clacu06g0733 Cmu06g0717 Cre06g1493 Cone14ag0174 Cone15ag0182 Cone7ag0344 Cone4ag0358 Lsi05g01763 Csa02g01034 Chy05g00297 Cme06g00458 . . . . . . . . Sed02g1441 Cmo06g01309 Cmo14g01879 Cma08g01064 Cma17g00146 Car08g00940 Car17g00128 Cpe12g00124 Cpe17g00213 Bhi12g01570 Tan06g2374 Cmetu06g1541 Lac12g2126 Hepe03g0308 . Lcy13g0405 . . . . . . . Lsi09g01201 Csa03g01178 Chy06g00440 Cme05g00607
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002355 1 2 1 0 0 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 0 2 1 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01301 Cma_Chr06 FPKM 1.252058 0.0 10.773552 10.328938 12.272678 11.370605 11.819553 4.90167 5.016253 4.873145
Cma06g01301 Cma_Chr00 FPKM 0.827913 0.721246 5.494135 5.536207 7.551818 6.200681 7.508634 2.794225 2.65492 3.011315