Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01306 ATGGCGCCACTTTTCCCTGGCTGTGACTATGAGCATTGGCTCATCGTGATGGACAAGCCTGGTGGTGAGGGTGCCTCTAAGCAACAGATGATTGACTGCTACGTTCAGACCCTCGCTAAACCTGGTGGTGAGGGTGCCTCTAAGCAACAGATGATTGACTGCTACGTTCAGACCCTCGCTAAAGTTCTTGGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTTTCTTGTGAGAGGTATTTTGGATTTGGGTGTGAGATTGATGAAGAGACCTCCAATAAGCTTGAGGGCTTGCCTGGTGTTCTCTTTGTTCTTCCTGATTCTTACGTCGACCCTGAGTATAAGGACTATGGGGCTGAGTTGTTCGTGAATGGTGAAATAGTTCAAAGGTCACCAGAGAGACAGAAAAGGGTGGAGCCACAGCCTCAAAGAGCTCAAGATAGACCGAGGTATAATGATCGGACCCGGTATGTAAGGCGCAGAGAAAACATGAGGTGA 501 47.9 MAPLFPGCDYEHWLIVMDKPGGEGASKQQMIDCYVQTLAKPGGEGASKQQMIDCYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQKRVEPQPQRAQDRPRYNDRTRYVRRRENMR 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8637860 8639725 + CmaCh06G013060.1 Cma06g01306 296860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01306 166 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 10 112 IPR037045 -
Cma06g01306 166 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 2 40 IPR039206 GO:0016554
Cma06g01306 166 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 40 166 IPR039206 GO:0016554
Cma06g01306 166 MobiDBLite consensus disorder prediction 132 166 - -
Cma06g01306 166 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 2 40 - -
Cma06g01306 166 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 40 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01306 - - - cmax:111473186 285.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01306 Cma14g01830 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01306 Cma-Chr6:8637860 Cma16g00423 Cma-Chr16:2113554 5.76E-38 dispersed
Cma06g01306 Cma-Chr6:8637860 Cma14g01830 Cma-Chr14:13071254 1.56E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01306 Cma_Chr06 FPKM 19.017014 20.796024 43.479523 42.290565 100.321938 97.196533 100.323364 59.152897 59.621262 57.525196