Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01307 ATGAGAGCAAAGGCCTGGATGAATGAGCAAATTTTACGCCTCAAGAATAAATTTAGCAAGATGATAAACTGTATTCGTTCAGGGGATCAATTAAAAGTGGATGAAATGATGCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGTACTGGGGAGGTGGAACCGAAGGTGGATAATGCCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGTTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTACCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGACATTGTTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGACGGCAATCACAAAGTGATGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCAAAATCTTGCAAACTACTTTTAGACACTGTTGAATCTGCATTACCCGAAGGCTTACCTGAAAATTTCGCCAATGATTGTAAATTGCAAGGGACACTAACAAAGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCTGCCGGGTCTCCTGAAGAATCTATCTTGTCATACAGGCGTGCCCTTATTTACCAATGGAATCTAGAAATGGAAACTAGAGCAAAAATAGAAAAAGAGTTTGCAATTTTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTTGCAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAAGCCATTCTTTTGTTAATGGATCTGTTGGGAAAATATATACATGGATTGGTTGTTTGGGACCCATCAATAACAGAGCATCTCTCGTTTGCACTGTCTATTGTTGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAACTATAGGAAGGAAAGAGAAGTACTGGACACTAGCTCTTTGTTACTACGGGGAAGGTAAAAGCTTAGTTGCGTTGAACCTTTTGAAGAACTTCTTGAATAACAAAGATAATGTAGGCTGCTTACTGGAATTGTTGTTAGCTTCAAAGCTCTGTGGAGAGAATTTGGTTTGTCTCGATGAGGGGGTGACTTACATATTGAGAGTGCTTTCGGAACTGGATGGTAGATGCATCCAGATGGTTTCCATTGCTAATTGCTTACATGGTGTATTACTGTCAGCCATATCCAAATCAATTGCTTCTGATTCTCAGAAATCTTTGAAGCAATCTGAGGCACTCAAGGCACTACAAACCGCTGAGCAACTGATGAAACAAAGGGATCCATTCATTGTGTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATATTGCTCTATACTACGCAAAACAGCTAGTGATACTCGAGGCTGGGTCTAGTGTGAAGTCGTACATCCTCTTGGCCAGAATATTGTCCTCCCAGAAACGGTTTGGGGATGCAGAGACTGTAATCAACGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAGCAGTATAGAAACATATACTCATCTTCTTGCTATAATTCGAGTCCGGACTAAAAGTAGTGGAGTTGGAAAGATGCTTTCAAAGGATGTCTCGGTGAGAACATCTGACAGAAGTCTGGAAATAGAAACATGGAATGATTTGGCCAATATGTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGCCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTTCTAAATGGTATTCCACAGGTTTACTGTATGAGTCTAAGGGTCTCCCACGAGATGCTTTGCAGGCATACAACAAAGGATTAGGCATCGATCCTAACCATGTTCCCAGCATGATATCAACTGCCCGTCTTCTCCAACAACTGGGCGGCAGGCAGTCATTTCCTGTGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGCAAACCCATCTGCATGGTACAATCTCGGGTTGCTATACAAAGCTGATGTCGGGGCATCCGTGCTGGAGGCTGCCGAATGTTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCTCCAGTTGAACCTTTCAGATGA 2217 42.44 MRAKAWMNEQILRLKNKFSKMINCIRSGDQLKVDEMMHSSDSLATRDYSASGFSSRTGEVEPKVDNANIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIVAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLLLDTVESALPEGLPENFANDCKLQGTLTKAVELLPELWKSAGSPEESILSYRRALIYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRLQMESSFVPRNNMEEAILLLMDLLGKYIHGLVVWDPSITEHLSFALSIVGEFGALANEVEQLPPGTIGRKEKYWTLALCYYGEGKSLVALNLLKNFLNNKDNVGCLLELLLASKLCGENLVCLDEGVTYILRVLSELDGRCIQMVSIANCLHGVLLSAISKSIASDSQKSLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVILEAGSSVKSYILLARILSSQKRFGDAETVINAALEQTGKWEQGELLRTKAKLQIAQGQLKSSIETYTHLLAIIRVRTKSSGVGKMLSKDVSVRTSDRSLEIETWNDLANMYTSLSQWRDAEICLSKLQAINPYSASKWYSTGLLYESKGLPRDALQAYNKGLGIDPNHVPSMISTARLLQQLGGRQSFPVSFPVVRSLLTDALRLDRANPSAWYNLGLLYKADVGASVLEAAECFEAATLLEESAPVEPFR 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8641597 8646431 - CmaCh06G013070.1 Cma06g01307 296861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01307 738 Gene3D Tetratricopeptide repeat domain 571 734 IPR011990 GO:0005515
Cma06g01307 738 Gene3D Tetratricopeptide repeat domain 63 567 IPR011990 GO:0005515
Cma06g01307 738 PANTHER PROTEIN NPG1 14 738 IPR043376 -
Cma06g01307 738 PANTHER OS10G0471400 PROTEIN 14 738 - -
Cma06g01307 738 SMART tpr_5 588 621 IPR019734 GO:0005515
Cma06g01307 738 SMART tpr_5 697 732 IPR019734 GO:0005515
Cma06g01307 738 SMART tpr_5 494 527 IPR019734 GO:0005515
Cma06g01307 738 SMART tpr_5 530 563 IPR019734 GO:0005515
Cma06g01307 738 SMART tpr_5 622 655 IPR019734 GO:0005515
Cma06g01307 738 SMART tpr_5 152 185 IPR019734 GO:0005515
Cma06g01307 738 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515
Cma06g01307 738 SUPERFAMILY TPR-like 440 559 IPR011990 GO:0005515
Cma06g01307 738 SUPERFAMILY TPR-like 531 708 IPR011990 GO:0005515
Cma06g01307 738 Pfam Tetratricopeptide repeat 625 655 IPR019734 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01307 Cma14g01828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01307 Cma-Chr6:8641597 Cma09g00720 Cma-Chr9:3420603 6.95E-169 dispersed
Cma14g01828 Cma-Chr14:13064593 Cma06g01307 Cma-Chr6:8641597 0 wgd
Cma19g00105 Cma-Chr19:634173 Cma06g01307 Cma-Chr6:8641597 0 wgd
Cma02g01732 Cma-Chr2:9733140 Cma06g01307 Cma-Chr6:8641597 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01307 K21843 - csv:101206105 1218.76