Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01309 ATGGTGAAATTCTCGAAGGAGTTGGAAGCTCAACTCATTCCTGAATGGAAAGATGCGTTCGTCAATTACTGGCACCTCAAGAAGCTCGTCAAGAGAGTCAAGCTCTCTAGAACCTCTATTCCTCCTACTCCTTCCTCCGCCGCCTCACTTTTTTCATCTCTCGCCGCCCACTTCCCCCTCCGCCTCCTCCGCCGCCGCCGCCGCCCCCTTGATGCCGACCACCTCTCTCAGGTCAAAAAGAGTGAAGATGGCAGCGACGGTAATGAAGATCGTGAAACCGAGCTTTCCCAGTTCTTCTCCGAAGAAGACGGGGTGAAGATGTTTTTTGAGACATTGGACGAAGAATTGGATAAAGTGAACGAGTTTTATGGGAGTAGAGAGAGTGAGTTTGTGGAGAGAGGGGACAGTCTTAGAGAGCAGCTTGGAATTTTGCTTGAATTCAAACGGATTCTTGAACATCGCCGCCGCAAAACTTCGCCGGCCGGCGGCTTTTCCCGGTCGTCTTCCTTTTCTCCTCGCCACTCCAATTTTTCTGAGAACTCGGAATCAAACGAAGTGTCAGCAGAAGTATCGGAGACGGATGAAGCAATCGCTGCATTGGAGAGGCACGGGGTCACGTTCATTAACGCCGCCGTGAGAGGGAAGATGAAGAAAGGAAATAAGCCGAAGATGGCGCTGCGAGTCGACATTCCAGCCACCACTCCGTCGAGGACCATCTCCGCCGTCATGGGGATGTTGTGGGAGGACCTGATCAACAATCCGAACAAGGATGCCTCCGGCGACTCGATCAGCCGGAAGAAGATCCAGTGGTCGGAGAAGATGCTCCGAGGCGCCTTTGTTGAGCTCTACAAAGGCCTCGGCCTCCTCAAAACCTTCAGTTCATTGAATATGAAAGCGTTCGTAAAGATTTTGAAGAAATTCGACAAGGTGGCTAACCAGAAGGCGTCAACCACCTACCTTCAACAGGTGAAAACGTCGCCGTTTATCAGCTCCGACAAGGTGGTAAGACTAATGGACGAAGTGGAATCCATATTCACGAAGCACTTCGCCAACAATGACAGGAAAAAGGCAATGAAATATTTGAGGCCTCAGCAGCCTAAAGATTCCCACATGACCACCTTCTTTGTTGGTTTGTTTACAGGTTGCTTTGTGTCGTTGTTTATTGTATACGCAATTTTGGCGCATTTGTCTGGTGTCTTCTCTCGAACAAATGAAGTTTCTTACATGGATGCTGTTTATCCTGTTTTCAGCATGTTTGCGTTGCTAAGCTTGCACATGTTTATGTACGGGTGCAATTTGTTCACGTGGAAACATGCGAGGATCAATTACAACTTCATTTTTGAGTTTCAATCGAGTACTGCGCTCAAATATCGTGATGCTTTTCTTGTATGCACCACCACTATGACTGCTGTGGTCGGAGCTTTAGTCATTCACTTAATTTTAGGACTCACTCGCTTCTCATCTGTCCAAGTTGATTCCATTCCCGGGCTTCTTTTACTTATTTTTCTCGTCCTACTTGTATGCCCGTTGGATATATTCTACCGACCAACACGCTATTACTTTCTTCGCGTGTTTCGTAACATTATTTTCTCTCCTTTTTACAAGGTTTTGTTCGTTGACTCTTTCTTGGCAGACCAACTTACAAGCCAGATCACTCTGCTGAGGCTCATGGAATCCGCTACCTGCTACTTCTTTGCGGGTTCCTTCGGAATGCATCGAGGCGATGTCTGCAAATCCGGGACGTTGTACTGGGAGTTGGCTTACCTCATTTCATTTTTGCCATACTATTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATGACAATGATTTGGACCATTTGGCTAACATGGGTAAGTATGTATCAGCCATGGTGGCAGCCGGGGCTAGGCTTACATATTCTCGACAAGACACTCGCCTCTGGTTCGTAATCGTATTAGTCACATCCTTTGTAGCTACAATATATCAGTTGTACTGGGACTTTGCAAAGGATTGGGGAATCCTCAATCCGAAATCTCGAAACCCGTGGCTCCGGGACGAACTCATCTTGAAGAACAAAGGCGTCTACTACCTGTCAATTGTTCTGAATGTGATCCTAAGAGTTGCTTGGGTTGAGACGGTATTACAGTTGCATAAACTACATATTCGAAACGTCGAGTCGAAAATGCTCGACTTCCTGTTGGCTTCATTGGAGGTCATCCGTCGAGGGCATTGGAATTTCTACAGATTAGAGAACGAACAGCTAAGCAACATAGGAAAATACAGGGCAGTTAAGACCGTTCCTCTACCGTTCCGTGAGGCTGACTCCGATGGCTAA 2319 47.3 MVKFSKELEAQLIPEWKDAFVNYWHLKKLVKRVKLSRTSIPPTPSSAASLFSSLAAHFPLRLLRRRRRPLDADHLSQVKKSEDGSDGNEDRETELSQFFSEEDGVKMFFETLDEELDKVNEFYGSRESEFVERGDSLREQLGILLEFKRILEHRRRKTSPAGGFSRSSSFSPRHSNFSENSESNEVSAEVSETDEAIAALERHGVTFINAAVRGKMKKGNKPKMALRVDIPATTPSRTISAVMGMLWEDLINNPNKDASGDSISRKKIQWSEKMLRGAFVELYKGLGLLKTFSSLNMKAFVKILKKFDKVANQKASTTYLQQVKTSPFISSDKVVRLMDEVESIFTKHFANNDRKKAMKYLRPQQPKDSHMTTFFVGLFTGCFVSLFIVYAILAHLSGVFSRTNEVSYMDAVYPVFSMFALLSLHMFMYGCNLFTWKHARINYNFIFEFQSSTALKYRDAFLVCTTTMTAVVGALVIHLILGLTRFSSVQVDSIPGLLLLIFLVLLVCPLDIFYRPTRYYFLRVFRNIIFSPFYKVLFVDSFLADQLTSQITLLRLMESATCYFFAGSFGMHRGDVCKSGTLYWELAYLISFLPYYWRAMQCARRWFDDNDLDHLANMGKYVSAMVAAGARLTYSRQDTRLWFVIVLVTSFVATIYQLYWDFAKDWGILNPKSRNPWLRDELILKNKGVYYLSIVLNVILRVAWVETVLQLHKLHIRNVESKMLDFLLASLEVIRRGHWNFYRLENEQLSNIGKYRAVKTVPLPFREADSDG 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8656765 8662071 + CmaCh06G013090.1 Cma06g01309 296863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01309 772 ProSiteProfiles SPX domain profile. 2 321 IPR004331 -
Cma06g01309 772 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 2 771 - -
Cma06g01309 772 MobiDBLite consensus disorder prediction 73 96 - -
Cma06g01309 772 MobiDBLite consensus disorder prediction 158 190 - -
Cma06g01309 772 Pfam SPX domain 2 323 IPR004331 -
Cma06g01309 772 Pfam EXS family 413 748 IPR004342 GO:0016021
Cma06g01309 772 CDD SPX_PHO1_like 3 317 IPR034092 -
Cma06g01309 772 ProSiteProfiles EXS domain profile. 578 772 IPR004342 GO:0016021
Cma06g01309 772 MobiDBLite consensus disorder prediction 161 187 - -
Cma06g01309 772 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 2 771 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01309 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206345 1301.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01309 Cma14g01826 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01309 Cma-Chr6:8656765 Cma18g01055 Cma-Chr18:8776107 0 dispersed
Cma15g00256 Cma-Chr15:1227327 Cma06g01309 Cma-Chr6:8656765 6.48E-08 dispersed
Cma18g01131 Cma-Chr18:9179371 Cma06g01309 Cma-Chr6:8656765 4.20E-06 dispersed
Cma14g01826 Cma-Chr14:13048679 Cma06g01309 Cma-Chr6:8656765 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g741 . . . . . Bpe14g01269 . . . . Cma06g01309 Cma14g01826 Car06g01123 Car14g01638 . Cpe08g00346 Cpe03g01529 Bhi01g00707 . . . Hepe05g1672 . . . . . . . . . Cone14ag0163 Cone15ag0173 . Cone4ag0344 Lsi05g01749 . . Cme06g00473 Blo02g00759 Blo07g00275 Bda11g00642 . . Bpe13g00545 Bma02g00764 Bma06g01609 . Cmo06g01316 Cmo14g01867 . . . . . . . . . . . . . Cla05g00429 Cam05g0467 Cec05g0476 Cco05g0476 Clacu05g0464 Cmu05g0443 Cre05g0504 . Csa03g01191 Chy06g00455 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005316 1 1 2 3 2 1 2 1 1 1 1 1 2 1 0 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01309 Cma_Chr06 FPKM 71.959526 80.051483 2.723421 2.83751 0.0 0.0 0.0 0.152804 0.0 0.0