Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01313 ATGGGCACCTCTGTCAAGGGCAACTCTGTAAAGGGCCTCTTAAAAGGACTAAGATACATTTCACAGATTTTCGATGAAAAGGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCATCTGGTAATCAAAATAATCCTGGCTGGATGAACGAGTTCAAATCTTCGCCACAAAGCCAAGACTCGGGGGATTTGGTGAATTCTAGTGGGGAACTCCCCAGCAAAGAGTCTGGAGAGATAGATGTGCAAAAGGCAAATCGATCTCGAAAGTCGAAATCGCAAACATCATCAGAAACGTCTTTAGACTCTTCTTCTGCTCGGCGACATTCTGAGAAAGGTTCTAGGCGACAACGCTCATCATGCCCTTCAGGCGAATCTGTTGCAGAAGGTAGTAATCGAAGCTCACGACGTCATCGTAGTTCGAATCAAGGGGGTTCATCAAGCTCAGAAAATCCTGCCCCAAAACACTCACATCGGAGGAAATCTAAGGGGTCATCTGACGGGGGTGAATCAACAAAATCCTCTAGATCAAGGGAGAATAACTCTTTAACAGACATACCAAGCCCAGTGTTGGAAGCAGTTGATGAAGAACAGGGGTGA 630 46.03 MGTSVKGNSVKGLLKGLRYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSGNQNNPGWMNEFKSSPQSQDSGDLVNSSGELPSKESGEIDVQKANRSRKSKSQTSSETSLDSSSARRHSEKGSRRQRSSCPSGESVAEGSNRSSRRHRSSNQGGSSSSENPAPKHSHRRKSKGSSDGGESTKSSRSRENNSLTDIPSPVLEAVDEEQG 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8678011 8679676 - CmaCh06G013130.1 Cma06g01313 296867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01313 209 Pfam P21-Rho-binding domain 32 66 IPR000095 -
Cma06g01313 209 CDD CRIB 31 66 - -
Cma06g01313 209 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 9 206 - -
Cma06g01313 209 SMART PBD_5 33 66 IPR000095 -
Cma06g01313 209 MobiDBLite consensus disorder prediction 44 209 - -
Cma06g01313 209 MobiDBLite consensus disorder prediction 99 113 - -
Cma06g01313 209 Gene3D CRIB domain 26 73 IPR036936 -
Cma06g01313 209 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 9 206 IPR044510 -
Cma06g01313 209 MobiDBLite consensus disorder prediction 49 84 - -
Cma06g01313 209 MobiDBLite consensus disorder prediction 114 128 - -
Cma06g01313 209 MobiDBLite consensus disorder prediction 178 197 - -
Cma06g01313 209 ProSiteProfiles CRIB domain profile. 33 46 IPR000095 -
Cma06g01313 209 MobiDBLite consensus disorder prediction 147 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01313 - - - csv:101211802 249.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01313 Cma14g01822 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01313 Cma-Chr6:8678011 Cma18g00241 Cma-Chr18:1274201 5.54E-26 dispersed
Cma14g01822 Cma-Chr14:13036299 Cma06g01313 Cma-Chr6:8678011 4.05E-86 wgd
Cma19g00102 Cma-Chr19:618051 Cma06g01313 Cma-Chr6:8678011 8.52E-24 wgd
Cma02g01734 Cma-Chr2:9741921 Cma06g01313 Cma-Chr6:8678011 2.44E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01313 Cma_Chr06 FPKM 0.0 0.278168 0.0 0.160765 0.0 0.0 0.0 0.46326 0.548466 0.61633