Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01318 ATGGGGCAACAACAATCGAAAGATGAACTGCTCTACCAGCAAGTAAGCTATGGAAATTCAGAAGGGATTAAAGCCCTTTGCCGAGAGGGTGCAGGCCTTGAGTGGATTGATAAGGATGCGAAAACCCCTTTAATTGTGGCCTGCATGAGTCCTGAGCTTCATAATGTTGCGAGAACTTTGATAGAACTTGGTGCTAATGTTAATGCGTATCGGCCTGGACGTCATGCTGGTACCCCTTTACATCATGCAGCTAAAAGAGGTCTTGAAAATAATGTCAAGTTACTTCTTTCTCATGGAGCAAATCCATTGATCATGAATGATGATTGCCAGAGTCCTCTTGATGTTGCTAGAGCAAAAGGTCACATCAATGTTGTTCGTACGATCGAGAGTCATATTTGTTTGTTCTCGGGTTGGTTGCGGGAGTTTCATGGACCAGGATTTTTGGAAGTACTGGCTCCTCAATTGGTCTCAAGGAGAGTGTATGTACTTTATTACCATAATTCTGAATTTAAGTTTCTTCTATTCGTAGTTCTATGTCAATCAAATACCGTGCATTGGGCTGTTATTTTACCATGTGGAGCAAGAAATCTTGCAAGGCCTTTAAAGCTGGAGCTTGCTATATACCCAACTTTACAGGACGCTCAACCGCGTATTGTTGTTCCACTGTGGAGAGCCAGTTTGGAGGAGACGAAGTCACAGCATTCTGATCCATCAGTTATGATTGTGGATAACGCGGCGAAAACTCGCTTGAAACTCGCATCCGGGAATGAAAATGACAAAGAACAACTTCTGTGGTTTTGCAATGCATGCAAAGGAATTCCTACGGTGATGCACCCTGCATTTATGAATGGTAACCAGGGCTCGGGTGCATCCGCAACTGCACCGCCAGACACAGAAGATGTGGAGCTAGACATGGCCATTAACGCTTCCATACAATCATCTACCCAGGGGAGACCACCCTTTCCAGATCCCAGTCCAAGTTCTAAAGCAAGTGCCTCTAGCAGCCATACAGGTCCAGTTGCACCAACAACACATTCGACGAAATTAGGCACGAATGATTCCGAAGTGCATGAAGCTGGCCAGAGCAGCAACTCAAACGAACATCCCGAAATCCAGACTAGCACCATCCCGTCAGATTCAGTACCTTCAGCTCCACCGGTGGCAAATGATATTCTGGATGATGGTGCAATTCACTATCCATCGATCGACTCAAGTCCGATTGACTTAAGACCGGGCGAAGGGAAAGAGGAAGCGAGTTCTTCATCATGTGTTATATGTTTGGATGCTCCCATTGAAGGAGCCTGCATTCCCTGTGGACATATGGCTGGGTGCATGAATTGTTTGACTGAAATCAAATCCAAGAAATGGGGCTGCCCAGTTTGTCGCGCCAAAATCGACCAGGTCGTCCGATTGTATGCTGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAACAGATTTGAATGGGCTGTAAACATTCAGCGTGATAGCTATGCATCATATGTTGGACACTATCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAGGTTGGTACATTGCCTTTACTTGTGTTTATTTATCTTTTCCCTGTCACGCCTTCTCTTCATAACATTAACCCCCCACCCAAAAGAAAAAAAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAAATCGTATTAGGTTGTGACAAGAGATTTTAG 1797 44.69 MGQQQSKDELLYQQVSYGNSEGIKALCREGAGLEWIDKDAKTPLIVACMSPELHNVARTLIELGANVNAYRPGRHAGTPLHHAAKRGLENNVKLLLSHGANPLIMNDDCQSPLDVARAKGHINVVRTIESHICLFSGWLREFHGPGFLEVLAPQLVSRRVYVLYYHNSEFKFLLFVVLCQSNTVHWAVILPCGARNLARPLKLELAIYPTLQDAQPRIVVPLWRASLEETKSQHSDPSVMIVDNAAKTRLKLASGNENDKEQLLWFCNACKGIPTVMHPAFMNGNQGSGASATAPPDTEDVELDMAINASIQSSTQGRPPFPDPSPSSKASASSSHTGPVAPTTHSTKLGTNDSEVHEAGQSSNSNEHPEIQTSTIPSDSVPSAPPVANDILDDGAIHYPSIDSSPIDLRPGEGKEEASSSSCVICLDAPIEGACIPCGHMAGCMNCLTEIKSKKWGCPVCRAKIDQVVRLYAASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGTLPLLVFIYLFPVTPSLHNINPPPKRKKKCYYLAAFLQKEKMIEIVLGCDKRF 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8704757 8711032 - CmaCh06G013180.1 Cma06g01318 296872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01318 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 483 IPR013083 -
Cma06g01318 598 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Cma06g01318 598 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Cma06g01318 598 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 162 - -
Cma06g01318 598 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Cma06g01318 598 PANTHER ROLLING PEBBLES, ISOFORM B 186 473 - -
Cma06g01318 598 PANTHER ROLLING PEBBLES, ISOFORM B 1 162 - -
Cma06g01318 598 Pfam Ankyrin repeats (many copies) 78 126 IPR002110 GO:0005515
Cma06g01318 598 Pfam Splicing factor 3B subunit 10 (SF3b10) 476 543 IPR009846 -
Cma06g01318 598 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Cma06g01318 598 Pfam Zinc finger, C3HC4 type (RING finger) 421 468 - -
Cma06g01318 598 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 186 473 - -
Cma06g01318 598 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cma06g01318 598 SMART ANK_2a 108 137 IPR002110 GO:0005515
Cma06g01318 598 SMART ANK_2a 39 69 IPR002110 GO:0005515
Cma06g01318 598 MobiDBLite consensus disorder prediction 313 414 - -
Cma06g01318 598 SUPERFAMILY RING/U-box 416 469 - -
Cma06g01318 598 Gene3D - 3 151 IPR036770 -
Cma06g01318 598 SMART ring_2 423 461 IPR001841 -
Cma06g01318 598 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Cma06g01318 598 MobiDBLite consensus disorder prediction 327 382 - -
Cma06g01318 598 ProSiteProfiles Zinc finger RING-type profile. 423 462 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01318 - - - mcha:111018163 766.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01318 Cma17g00162 CCT
Cma06g01318 Cma14g01815 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01318 Cma-Chr6:8704757 Cma20g00696 Cma-Chr20:3189782 3.21E-11 dispersed
Cma03g01346 Cma-Chr3:8605869 Cma06g01318 Cma-Chr6:8704757 2.90E-45 transposed
Cma14g01815 Cma-Chr14:13003980 Cma06g01318 Cma-Chr6:8704757 0 wgd
Cma17g00162 Cma-Chr17:827734 Cma06g01318 Cma-Chr6:8704757 5.39E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01318 Cma_Chr06 FPKM 31.603525 29.824179 26.192818 28.562687 26.459284 27.902796 28.805336 28.602629 29.454327 30.474371