Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01329 ATGATCATTTTCCCGGCCGCCGTGTACGACGCTGCGTGCAGAAAATGGAAACGCTCCACCGTCGTCATGATCGGCGGTGGAAGAGTGGTTCAGAAGTTGTATGGTGTATGGGGTCCGCGTGTACCAACTCAGAACCTCACTTTACAAAGCTTCTTCATTACCCTTCGTTCTTTAATTCCTTTTTCTGCATTAGGGTTTGCTCCGAATTCCACTCAATCTTCTTCCAATCGAATATATTCTTCCTTTTTCCCCATCGATCTGCCACCATTCTTTTCATCTCTCCAAGAGGAACCACACCATAGGATGGAATCTGCTACCCTTAATAGAATAATTAGCAGGTTGCTTGAAACCGGGAGCAAATCGGGGAAGCAGGCGCCGCTTTCTGAGACGGAAATTACTCAGTTATGCATGGTCTCCAGGAATATCTTCTTAAGGCAACCAAATCTTTTGGAAATTGAAGCTCCTGTCTATATCTGCGGAGACATCCATGGCCAGTATACTGATCTTCTAAGGCTTCTTGAATATGGTGGATTACCCCCTCATTCGAACTACTTGTTCTTGGGGGACTATGTAGATCGTGGAAAGCAGAGCTTAGAAACCATGTGCCTTCTCCTTGCATATAAAATAAAATATCCTGAAAACTTCTTTCTTTTGAGGGGCAACCATGAATGTGCATCTGTCAACCGTATCTACGGATTTTACGACGAATGTAAACGGAGATTCAACGTTAAACTCTGGAAGATATTCACAGACTGTTTCAATTGCTTGCCTATGGCTGCTCTGATTGATGAAAGGATACTCTGTATGCATGGTGGACTGTCTCCTCACCTAGACACGTTGGATCAGATTAGGAACTTAAAGCGGCCTACTGATGTTCCCGACAAAGGATTAGTTTGTGATCTTCTCTGGTCTGATCCAAGTCAAGAAACACGAGGCTGGGGACCGAATGAACGAGGGGTTTCTTACACGTTTGGAGTGGATCGAGTTATAGAGTTTCTTCGAAAGCATGATCTTGATTTGATTTGTAGAGCTCACCAGGGGAGTGGATCGAGTTATAGAGTCGTGGAGGACGGGTACGAGTTTTTCGCAAATCGAAAACTTGTAACAATATTTTCTGCTCCAAATTACTGTGGAGAGTTTGATAATGCTGGTGCAATGATGCGCGTGGATGAAAATTTAATGTGTTCGTTCCAAATACTAAAACCAGCCGATAAGAAGTCGAGGTTTGGCTTCGGCAGCATGTCGTTGGGACGTCGTTTCTGGGAGGAATCGGATGAAACTCATACCATGTTCTTACCGAACTGCGTCATCTGA 1314 44.37 MIIFPAAVYDAACRKWKRSTVVMIGGGRVVQKLYGVWGPRVPTQNLTLQSFFITLRSLIPFSALGFAPNSTQSSSNRIYSSFFPIDLPPFFSSLQEEPHHRMESATLNRIISRLLETGSKSGKQAPLSETEITQLCMVSRNIFLRQPNLLEIEAPVYICGDIHGQYTDLLRLLEYGGLPPHSNYLFLGDYVDRGKQSLETMCLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKLWKIFTDCFNCLPMAALIDERILCMHGGLSPHLDTLDQIRNLKRPTDVPDKGLVCDLLWSDPSQETRGWGPNERGVSYTFGVDRVIEFLRKHDLDLICRAHQGSGSSYRVVEDGYEFFANRKLVTIFSAPNYCGEFDNAGAMMRVDENLMCSFQILKPADKKSRFGFGSMSLGRRFWEESDETHTMFLPNCVI 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8747442 8750246 - CmaCh06G013290.1 Cma06g01329 296883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01329 437 Gene3D - 99 413 IPR029052 -
Cma06g01329 437 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 102 419 - -
Cma06g01329 437 Pfam Serine-threonine protein phosphatase N-terminal domain 107 153 IPR031675 -
Cma06g01329 437 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 102 419 - -
Cma06g01329 437 CDD MPP_PP1_PPKL 107 402 - -
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 366 382 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 217 241 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 337 357 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 280 307 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 251 277 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 155 182 IPR006186 GO:0016787
Cma06g01329 437 PRINTS Serine/threonine phosphatase family signature 184 211 IPR006186 GO:0016787
Cma06g01329 437 SUPERFAMILY Metallo-dependent phosphatases 122 407 IPR029052 -
Cma06g01329 437 ProSitePatterns Serine/threonine specific protein phosphatases signature. 218 223 IPR006186 GO:0016787
Cma06g01329 437 SMART pp2a_7 127 404 IPR006186 GO:0016787
Cma06g01329 437 Pfam Calcineurin-like phosphoesterase 155 346 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01329 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - csv:101209828 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01329 Cma-Chr6:8747442 Cma11g00982 Cma-Chr11:5220896 0 dispersed
Cma06g01329 Cma-Chr6:8747442 Cma10g01009 Cma-Chr10:5268398 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01329 Cma_Chr06 FPKM 6.498205 7.636488 19.758093 18.419432 6.865015 6.127648 7.932726 17.167765 15.657003 20.108889
Cma06g01329 Cma_Chr00 FPKM 7.935729 8.470756 5.640257 5.069027 2.31312 2.158208 2.511917 5.069372 5.484501 6.128793