Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01330 | ATGGATTACTCTGGATTCTTCTCGCCGGCGTCCGATTTCTCATCGGAATCCTCGTTTGATTCGCCGGAATCTTCCTTCATCAATTTGGATCATAATTTTCTTCCTTTTAATGAGAATGATTCCGAGGAAATGCTTCTCTATGAGCTGATCTCGGAGGGGAGGCAGGATTCGTCCGAGAAGGGAATTGGGGCGGTGCGAGTTAAGGAGGAGGAGGTGGATTCCGTGGGCGAAGAGAGCCCAAAGAAGGAGAGGTCTTACAGGGGAGTTCGCCGGCGTCCATGGGGGAAATTCGCCGCCGAAATTAGAGATTCCACCAGACATGGCATAAGGGTATGGTTGGGAACTTTCGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCGATGAGAGGAGCCGCGGCGATTCTCAATTTCCCCGTGGACAGAGTTAGGGAATCTCTGAAGGAAATGAACTGCAGCGGCGATGGTTATGGTCTCGCCGAGGACGGCGGGTCGCCGGTGATTGCTTTGAAAAGAAAACACTCGGTGAGAAGGAATGGCATAAGCAAAAAGAAGAAAGAGAGAGATGTAAGGATCCAAAACATGGTGGTTTTGGAGGATTTAGGAACAGAGTATTTGGAAGAGCTTCTGGGGTGTTCTCAAAGTGGCAGCCCTTGTTGTTGCTAA | 678 | 50.74 | MDYSGFFSPASDFSSESSFDSPESSFINLDHNFLPFNENDSEEMLLYELISEGRQDSSEKGIGAVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGAAAILNFPVDRVRESLKEMNCSGDGYGLAEDGGSPVIALKRKHSVRRNGISKKKKERDVRIQNMVVLEDLGTEYLEELLGCSQSGSPCCC | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8751295 | 8751972 | - | CmaCh06G013300.1 | Cma06g01330 | 296884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01330 | 225 | MobiDBLite | consensus disorder prediction | 54 | 86 | - | - | |
Cma06g01330 | 225 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 27 | 216 | - | - | |
Cma06g01330 | 225 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cma06g01330 | 225 | ProSiteProfiles | AP2/ERF domain profile. | 85 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | SUPERFAMILY | DNA-binding domain | 86 | 144 | IPR016177 | GO:0003677 | |
Cma06g01330 | 225 | CDD | AP2 | 86 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | PRINTS | Ethylene responsive element binding protein signature | 86 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | PRINTS | Ethylene responsive element binding protein signature | 109 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma06g01330 | 225 | MobiDBLite | consensus disorder prediction | 54 | 85 | - | - | |
Cma06g01330 | 225 | PANTHER | DNA-BINDING DOMAIN | 27 | 216 | IPR044808 | GO:0003700|GO:0009873 | |
Cma06g01330 | 225 | Gene3D | AP2/ERF domain | 85 | 145 | IPR036955 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | Pfam | AP2 domain | 86 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g01330 | 225 | SMART | rav1_2 | 85 | 149 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01330 | Cma-Chr6:8751295 | Cma14g01810 | Cma-Chr14:12979490 | 1.83E-94 | dispersed | |
Cma17g00167 | Cma-Chr17:862949 | Cma06g01330 | Cma-Chr6:8751295 | 4.59E-65 | wgd | |
Cma19g00084 | Cma-Chr19:506769 | Cma06g01330 | Cma-Chr6:8751295 | 5.17E-48 | wgd | |
Cma02g01751 | Cma-Chr2:9801242 | Cma06g01330 | Cma-Chr6:8751295 | 5.22E-45 | wgd | |
Cma06g01330 | Cma-Chr6:8751295 | Cma08g01086 | Cma-Chr8:6782139 | 8.79E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35262 | PF00847 | AP2 | 1.30E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01330 | K14516 | - | csv:101210326 | 343.584 |