Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01330 ATGGATTACTCTGGATTCTTCTCGCCGGCGTCCGATTTCTCATCGGAATCCTCGTTTGATTCGCCGGAATCTTCCTTCATCAATTTGGATCATAATTTTCTTCCTTTTAATGAGAATGATTCCGAGGAAATGCTTCTCTATGAGCTGATCTCGGAGGGGAGGCAGGATTCGTCCGAGAAGGGAATTGGGGCGGTGCGAGTTAAGGAGGAGGAGGTGGATTCCGTGGGCGAAGAGAGCCCAAAGAAGGAGAGGTCTTACAGGGGAGTTCGCCGGCGTCCATGGGGGAAATTCGCCGCCGAAATTAGAGATTCCACCAGACATGGCATAAGGGTATGGTTGGGAACTTTCGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCGATGAGAGGAGCCGCGGCGATTCTCAATTTCCCCGTGGACAGAGTTAGGGAATCTCTGAAGGAAATGAACTGCAGCGGCGATGGTTATGGTCTCGCCGAGGACGGCGGGTCGCCGGTGATTGCTTTGAAAAGAAAACACTCGGTGAGAAGGAATGGCATAAGCAAAAAGAAGAAAGAGAGAGATGTAAGGATCCAAAACATGGTGGTTTTGGAGGATTTAGGAACAGAGTATTTGGAAGAGCTTCTGGGGTGTTCTCAAAGTGGCAGCCCTTGTTGTTGCTAA 678 50.74 MDYSGFFSPASDFSSESSFDSPESSFINLDHNFLPFNENDSEEMLLYELISEGRQDSSEKGIGAVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGAAAILNFPVDRVRESLKEMNCSGDGYGLAEDGGSPVIALKRKHSVRRNGISKKKKERDVRIQNMVVLEDLGTEYLEELLGCSQSGSPCCC 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8751295 8751972 - CmaCh06G013300.1 Cma06g01330 296884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01330 225 MobiDBLite consensus disorder prediction 54 86 - -
Cma06g01330 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 216 - -
Cma06g01330 225 MobiDBLite consensus disorder prediction 8 24 - -
Cma06g01330 225 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cma06g01330 225 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Cma06g01330 225 CDD AP2 86 120 IPR001471 GO:0003700|GO:0006355
Cma06g01330 225 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cma06g01330 225 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Cma06g01330 225 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g01330 225 MobiDBLite consensus disorder prediction 54 85 - -
Cma06g01330 225 PANTHER DNA-BINDING DOMAIN 27 216 IPR044808 GO:0003700|GO:0009873
Cma06g01330 225 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Cma06g01330 225 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Cma06g01330 225 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01330 Cma-Chr6:8751295 Cma14g01810 Cma-Chr14:12979490 1.83E-94 dispersed
Cma17g00167 Cma-Chr17:862949 Cma06g01330 Cma-Chr6:8751295 4.59E-65 wgd
Cma19g00084 Cma-Chr19:506769 Cma06g01330 Cma-Chr6:8751295 5.17E-48 wgd
Cma02g01751 Cma-Chr2:9801242 Cma06g01330 Cma-Chr6:8751295 5.22E-45 wgd
Cma06g01330 Cma-Chr6:8751295 Cma08g01086 Cma-Chr8:6782139 8.79E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35262 PF00847 AP2 1.30E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01330 K14516 - csv:101210326 343.584