Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01333 ATGGATCCATTGGAGGACCCGAGCTGTTCGGATTTTCTTGATTACTCCTTGTTCGCCGACGCCGACAACACTGTTAGCCCTTCGCTCGGTCCTCTATGGCTGCCTAATGATTTCAGGGATGGTGGTGCGGATACGGGTGTTTCAGACGGGCGTGTTGAATCTGAAGAAACCGATTGTTTGCGGAAGAGGGTGCGAGATGAGCCGTGCACTGGACCAACTTCTAAAGCTTGTCGCGAGAGGTTGCGGAGAGGGAGATTAAATGATAGGTTTCTAGATTTGAGCCATGCTTTAGAACCTGATAGACCTGCCAAAACTAACAAGCCTGCCATACTTGATGATGCCATTAGAGTGTTGAATCAACTCAAGACTGAAGCTGAAGAGCTCAAACAAACTAACGAAAAGCTACGGGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAGGAGAAAACAATTTTGAAGGAAGACAAAGAAAGAATCGAGCAACAGTTGAAATCTATAGCCATTCCACCTCCAGGGCTTATCCCAGGTCATCCTGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATACCAATGTGGCCATATCTTCCTCCATCAGTATGTGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAG 678 46.76 MDPLEDPSCSDFLDYSLFADADNTVSPSLGPLWLPNDFRDGGADTGVSDGRVESEETDCLRKRVRDEPCTGPTSKACRERLRRGRLNDRFLDLSHALEPDRPAKTNKPAILDDAIRVLNQLKTEAEELKQTNEKLREEVECLKAEKNDLRKEKTILKEDKERIEQQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWPYLPPSVCDTSQDHELRPPAA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8764055 8766359 + CmaCh06G013330.1 Cma06g01333 296887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01333 225 Gene3D - 73 149 IPR036638 GO:0046983
Cma06g01333 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 141 IPR036638 GO:0046983
Cma06g01333 225 Coils Coil 111 166 - -
Cma06g01333 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Cma06g01333 225 SMART finulus 76 127 IPR011598 GO:0046983
Cma06g01333 225 PANTHER TRANSCRIPTION FACTOR BHLH104 1 225 - -
Cma06g01333 225 PANTHER BHLH TRANSCRIPTION FACTOR 1 225 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma06g01333 225 CDD bHLH_AtILR3_like 75 150 - -
Cma06g01333 225 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01333 - - - csv:101210812 340.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01333 Cma14g01806 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01333 Cma-Chr6:8764055 Cma16g00846 Cma-Chr16:4970716 9.38E-53 dispersed
Cma14g01806 Cma-Chr14:12966023 Cma06g01333 Cma-Chr6:8764055 5.66E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g672 . . . . . . . . . . Cma06g01333 Cma14g01806 Car06g01144 . . Cpe08g00327 . . . . . . . . . . . . . . . . . Cone7ag0314 Cone4ag0319 Lsi05g01719 . . Cme06g00505 . Blo07g00255 Bda11g00625 . . Bpe13g00563 . Bma06g01596 . Cmo06g01337 Cmo14g01842 . . . . . . . . . . . . . Cla05g00455 Cam05g0496 Cec05g0505 Cco05g0504 Clacu05g0491 Cmu05g0468 Cre05g0531 . Csa03g01221 Chy06g00483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35264 PF00010 HLH 2.40E-07 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01333 Cma_Chr06 FPKM 22.256742 19.611839 15.526141 16.411127 15.79499 15.28118 17.003342 11.920725 13.102085 13.535613