Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01339 | ATGGGTCTGGCGAATCCTTGGTGGACCACGCAGGTAGGGCTGCCGGGGCTGGATCATCATCACCCGGCGGCGGTCAACTCACCAATCTTCAAACAAAGCGATGAAAACAGCGGCGGAGGAAGCGGAAGCCGAGAGGACGACGACGATGACAACAACCGTGATGAACCGAAAGAAGGTGCTGTGGAAACCGGAAACCGGAGACCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCCATCTTTGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTTCTAGAGGTGGCTGCCGGATCTGACGTGGCGAATTCCATCGCCCAATTCGCTCGGAAGCGCCAGCGTGGCGTCTGCGTTCTCAGTGCAACCGGCTTGGTCGCTAACGTCACGTTACGTCAGCCTACATCTCCCGGTTCGGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCGTTTTTACCCGGTCCAGCCCCACCCGGATCCACCGGGCTGACCGTTTACTTGTCGGGCGGTCAGGGGCAGGTCGTCGGCGGGAGCGTTGTTGGGTCGCTTGTGGCGGCCGGTCCTATTATGGTAATTGCTGCTACTTTTTCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCGGAGGATCATGAAATTGGCAGTGGATCCGCCTCACACGGCGGCGCTACAAGCCCACCACAGGAAATTAGAGGCGGTGGGCAGATGCCAACTGGGATGCCGGATCCCACTTTGCCGTTGTATAATTTACTGCCCGACATGATGCCCAACGGCGTTCAGCTCGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA | 852 | 57.04 | MGLANPWWTTQVGLPGLDHHHPAAVNSPIFKQSDENSGGGSGSREDDDDDNNRDEPKEGAVETGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVANSIAQFARKRQRGVCVLSATGLVANVTLRQPTSPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFSNATYERLPLEDPEDHEIGSGSASHGGATSPPQEIRGGGQMPTGMPDPTLPLYNLLPDMMPNGVQLGHDGYAYVRPPY | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8796348 | 8797350 | + | CmaCh06G013390.1 | Cma06g01339 | 296893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01339 | 283 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Cma06g01339 | 283 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 9 | 278 | - | - | |
| Cma06g01339 | 283 | Gene3D | - | 93 | 223 | - | - | |
| Cma06g01339 | 283 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 218 | - | - | |
| Cma06g01339 | 283 | PIRSF | ESCAROLA | 12 | 281 | IPR014476 | GO:0003680 | |
| Cma06g01339 | 283 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 9 | 278 | IPR014476 | GO:0003680 | |
| Cma06g01339 | 283 | MobiDBLite | consensus disorder prediction | 217 | 257 | - | - | |
| Cma06g01339 | 283 | CDD | DUF296 | 94 | 176 | IPR005175 | - | |
| Cma06g01339 | 283 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 94 | 207 | IPR005175 | - | |
| Cma06g01339 | 283 | ProSiteProfiles | PPC domain profile profile. | 90 | 231 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00200 | Cma-Chr4:955547 | Cma06g01339 | Cma-Chr6:8796348 | 2.34E-70 | dispersed | |
| Cma04g01169 | Cma-Chr4:5964845 | Cma06g01339 | Cma-Chr6:8796348 | 2.00E-72 | dispersed | |
| Cma05g01227 | Cma-Chr5:9430823 | Cma06g01339 | Cma-Chr6:8796348 | 2.17E-92 | dispersed | |
| Cma06g01339 | Cma-Chr6:8796348 | Cma12g01143 | Cma-Chr12:9003109 | 1.73E-76 | dispersed | |
| Cma14g01795 | Cma-Chr14:12942583 | Cma06g01339 | Cma-Chr6:8796348 | 5.80E-165 | wgd | |
| Cma17g00175 | Cma-Chr17:904430 | Cma06g01339 | Cma-Chr6:8796348 | 6.67E-62 | wgd | |
| Cma06g01339 | Cma-Chr6:8796348 | Cma08g01097 | Cma-Chr8:6829001 | 1.71E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01339 | - | - | cmos:111452940 | 503.056 |