Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01339 ATGGGTCTGGCGAATCCTTGGTGGACCACGCAGGTAGGGCTGCCGGGGCTGGATCATCATCACCCGGCGGCGGTCAACTCACCAATCTTCAAACAAAGCGATGAAAACAGCGGCGGAGGAAGCGGAAGCCGAGAGGACGACGACGATGACAACAACCGTGATGAACCGAAAGAAGGTGCTGTGGAAACCGGAAACCGGAGACCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCCATCTTTGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTTCTAGAGGTGGCTGCCGGATCTGACGTGGCGAATTCCATCGCCCAATTCGCTCGGAAGCGCCAGCGTGGCGTCTGCGTTCTCAGTGCAACCGGCTTGGTCGCTAACGTCACGTTACGTCAGCCTACATCTCCCGGTTCGGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCGTTTTTACCCGGTCCAGCCCCACCCGGATCCACCGGGCTGACCGTTTACTTGTCGGGCGGTCAGGGGCAGGTCGTCGGCGGGAGCGTTGTTGGGTCGCTTGTGGCGGCCGGTCCTATTATGGTAATTGCTGCTACTTTTTCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCGGAGGATCATGAAATTGGCAGTGGATCCGCCTCACACGGCGGCGCTACAAGCCCACCACAGGAAATTAGAGGCGGTGGGCAGATGCCAACTGGGATGCCGGATCCCACTTTGCCGTTGTATAATTTACTGCCCGACATGATGCCCAACGGCGTTCAGCTCGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA 852 57.04 MGLANPWWTTQVGLPGLDHHHPAAVNSPIFKQSDENSGGGSGSREDDDDDNNRDEPKEGAVETGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVANSIAQFARKRQRGVCVLSATGLVANVTLRQPTSPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFSNATYERLPLEDPEDHEIGSGSASHGGATSPPQEIRGGGQMPTGMPDPTLPLYNLLPDMMPNGVQLGHDGYAYVRPPY 283
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 8796348 8797350 + CmaCh06G013390.1 Cma06g01339 296893
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01339 283 MobiDBLite consensus disorder prediction 1 88 - -
Cma06g01339 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 9 278 - -
Cma06g01339 283 Gene3D - 93 223 - -
Cma06g01339 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cma06g01339 283 PIRSF ESCAROLA 12 281 IPR014476 GO:0003680
Cma06g01339 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 278 IPR014476 GO:0003680
Cma06g01339 283 MobiDBLite consensus disorder prediction 217 257 - -
Cma06g01339 283 CDD DUF296 94 176 IPR005175 -
Cma06g01339 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 207 IPR005175 -
Cma06g01339 283 ProSiteProfiles PPC domain profile profile. 90 231 IPR005175 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00200 Cma-Chr4:955547 Cma06g01339 Cma-Chr6:8796348 2.34E-70 dispersed
Cma04g01169 Cma-Chr4:5964845 Cma06g01339 Cma-Chr6:8796348 2.00E-72 dispersed
Cma05g01227 Cma-Chr5:9430823 Cma06g01339 Cma-Chr6:8796348 2.17E-92 dispersed
Cma06g01339 Cma-Chr6:8796348 Cma12g01143 Cma-Chr12:9003109 1.73E-76 dispersed
Cma14g01795 Cma-Chr14:12942583 Cma06g01339 Cma-Chr6:8796348 5.80E-165 wgd
Cma17g00175 Cma-Chr17:904430 Cma06g01339 Cma-Chr6:8796348 6.67E-62 wgd
Cma06g01339 Cma-Chr6:8796348 Cma08g01097 Cma-Chr8:6829001 1.71E-72 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01339 - - cmos:111452940 503.056