Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01341 ATGGCAAAGCCATTAGCCTTCGCTTATCCATTGCAATGCACTTCACCAATCAGAATATGGCAACGGTTCGTTTTGCGCGCCCAATTTCACTTTTCTAGTTCCTCGCGATTCTCGCCGCCGCTCCTCTGCGTCCGCCTCCGCCTCTGCCGCCCTCAGTTTTCTGTAACAGAGTTAAGGGGTTTTAATCGATGTGCGATCTTCCAATTCATAACATGGCGATCTCAAATTTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGAAAGTGGTGGCTGAAAAGGCAGATAGAGATGGTCTCAACTTCCAGAGGTACATTATGGCACGTCTATTAGAGAACTTATTGAAGGAGAGGGCCAGCAAAGACCATGGCTATTTTATTGCTGTTACTAGCTTGAAGAGCATAGGCAAGGGACAGTGCAAGAATAAATCTCAGTATGTTACATTCCCCATTACCTTTGGCTGCCGAACCTTTGTGCCTTCAGGGGGAGAAATCTTGCTTGGAGTTGTTCGTCACGTATTTCGTCGCGGATTGCTCCTAAAATGTGGACCGATCAACTACGTGTTTCTTTCATCTCGTAAAATGCCAACCTACCATTATGTTGGTGGTAAGAATCCTGTCTTCTCAAGCAACGAATTCGCCACGATTCGAACCGAGAGCGCTGTACGGTTCAATGTGCTTGGTGTGAGATGGATAGAGAAAAGAGGATGCATCAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAGCAACACACTTGGACCCATTTCATTGTCGGAAGCCGATGAGTTAGGCTTGCAAACTTAG 813 45.88 MAKPLAFAYPLQCTSPIRIWQRFVLRAQFHFSSSSRFSPPLLCVRLRLCRPQFSVTELRGFNRCAIFQFITWRSQIWEMFCEVELVRDVKVVAEKADRDGLNFQRYIMARLLENLLKERASKDHGYFIAVTSLKSIGKGQCKNKSQYVTFPITFGCRTFVPSGGEILLGVVRHVFRRGLLLKCGPINYVFLSSRKMPTYHYVGGKNPVFSSNEFATIRTESAVRFNVLGVRWIEKRGCIKKEFVMLASLEGSNTLGPISLSEADELGLQT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8807669 8809434 + CmaCh06G013410.1 Cma06g01341 296895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01341 270 Gene3D - 163 257 IPR012340 -
Cma06g01341 270 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 79 267 IPR045113 GO:0006352
Cma06g01341 270 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 79 159 IPR036898 -
Cma06g01341 270 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 7-LIKE PROTEIN 79 267 - -
Cma06g01341 270 Gene3D - 79 161 IPR036898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01341 K16253 NRPD7, NRPE7; DNA-directed RNA polymerase IV and V subunit 7 - csv:101218353 291.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01341 Cma17g00180 CCT
Cma06g01341 Cma14g01777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01341 Cma-Chr6:8807669 Cma15g00781 Cma-Chr15:3885169 5.60E-17 dispersed
Cma14g01777 Cma-Chr14:12870885 Cma06g01341 Cma-Chr6:8807669 1.04E-110 wgd
Cma17g00180 Cma-Chr17:934982 Cma06g01341 Cma-Chr6:8807669 4.18E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g610 Blo01g00098 . . Bda08g00267 . . . Bma05g01077 . Cmo17g00177 Cma06g01341 Cma14g01777 Car06g01163 Car14g01598 . Cpe08g00308 . . . . . . . . Cla06g00636 Cam06g0680 Cec06g0683 Cco06g0689 Clacu06g0666 Cmu06g0658 Cre06g1426 . . . Cone4ag0293 Lsi05g01668 Csa02g01091 Chy05g00352 Cme06g00544 . . . . Bpe05g00867 . . . . Cmo06g01353 Cmo14g01814 . Cma17g00180 . Car17g00162 Cpe12g00156 . Bhi12g01661 . . . Hepe03g0254 . . Cla05g00487 Cam05g0531 Cec05g0543 Cco05g0543 Clacu05g0529 Cmu05g0501 Cre05g0569 Lsi09g01264 Csa03g01262 Chy06g00517 Cme05g00531
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013666 0 0 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01341 Cma_Chr06 FPKM 7.03321 7.883704 38.821003 38.768864 15.368488 16.736523 13.624439 32.947586 36.019669 32.350937