Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01347 ATGATCCAAGAATATGACAAGTATCTTGGACCTGGTAGTGTATTGGAAATCTTATCAGATGCACCATTTGATGAAAGAAAAAGAGCTTACAAAGCTGTGGACCGTAACAAGTTAAAAAATGTCAGAGTTTCTCATAGGATAGGAAACCCTATGAACTATGCTAGCTTAGAGGAAACCCTACTAAATATTAAAAGTTCTTTCAATAAAAGTGAAGATGTTCCGTTGTCCATCGCTGTGATATCCGACAGGGAATGGCTTCTTGGGGATCCATCTAGGTCTGACAAACACTCAGTATATACTCTTCTCCTTGCTGAAAGTATCTGTCAGAAACATGGAGTGAAGGTTCAAAATCTTGCTGCAGAGATTGTTGACTCCAAATTGGGGAAACAAGTAACAAGAATAAAACCTTCCCTGACGTACATAGCAGCAGAGGAAATAATGAGTCTTGTCACAGCTCAAGTGGCAGAGGATAGTGAACTGAATCAAGTATGGAAAGATATTTTGAATGCCGAAGGTGATGAAATTTATGTGAAGGATATCAGTGGCTACATGAAACAAGGGGAGGATCTCTCATTTGCAGAACTTGCTGAAAGAGCACATCTAAAGCAAGAAGTAGCCATTGGCTATATTAAAAATAATAGACAGGTAATCAATCCAATTCCTAAGTCTGAACCAATCTCTCTTGAATTAACTGATTCGTTAATTCCTGCACAAAACCCTTGCTTTCCTGCATACCACTTTCTCCTTTCTCTCTCATCTGTGTCTAGGGCAACCATGGCCCACGGTGGCTACGGCAAGCGCAGGGTGAACCCGGCAGCGCGCCGATCGAAGGCTTTAGCTGTTGAGAAGAAGCCCAAGTCCGTCTCCCTCAAGAACCAGATTCGATCCGCTGAGCGCATGCTTCGCAAGAATTTGCCAGCTGAAGTGAGGGAGGTTCAAGAGAAGAAGTTGGAAGGACTTAGAAAACAGCAAGAAATTCATTCTCGTCTGGCTGTTGAGCGCAAAATATTCTTGCGGGATAGGAAGATCAAATTTTTTGAGAGGAGAAAAATTGAAAGAAGAATTAGACGCCTTGAAAAACTGCAACGTGCTCCATCTGGTCAGTCGCAAGATTCGGATATTGCAGATCAATTGTCTAAGTTGAAGGAGGATCTTGAATATGTCAGGTTCTTTCCCAAAACAGAAAAATATTTAGCTTTATTTACTGGAAGTGATGATTCGGACACGGTTGATAGGAGGAATAAGTTGCGCAAGCAGATAAAAGCCAATCTAATTGCTGCTGCAGCCAGTGGAAAGGATTTAGAAGAGACAGGTAGTGAGGATGATGGGTTACTTGACATGAGTGAGGATGATTTCTTCGTATCTGGTAGCTCAAGTGATGAAGCAGATGCAGATGATGAATGGACAGATAAAAGTGCAAGGGAACATGCTTCTAGTACTTCTGGCAAGGCAGCATCAGGCATGTCTAGCGATGAAAGAAATCATCAGAGGCAGCAGATCTCTGCCAGAGCCTTAATGCCACCTCCCCGTCCAACCAAATCATTTCCAAGCTCAGCCCAAGCTCGGTCAAAACCAGGGTCTTCATTAAGAAAATTTTCGACAAATCGTAGGGCCGAGGTTTCTTCATCCAGCAATACATCAAGTAGCAGAAGTGGATCTTCTTTTAAGGTTAGGGGTTCCTCAAACTCTCAGACAGGTCACAGCAGTAATATAAGTTCCAATTCTGATGCTCACAAACCCCGAAGAAAGAGAAGGCCTAAAAAGAAAAAGCAGCAGGCATGA 1782 42.54 MIQEYDKYLGPGSVLEILSDAPFDERKRAYKAVDRNKLKNVRVSHRIGNPMNYASLEETLLNIKSSFNKSEDVPLSIAVISDREWLLGDPSRSDKHSVYTLLLAESICQKHGVKVQNLAAEIVDSKLGKQVTRIKPSLTYIAAEEIMSLVTAQVAEDSELNQVWKDILNAEGDEIYVKDISGYMKQGEDLSFAELAERAHLKQEVAIGYIKNNRQVINPIPKSEPISLELTDSLIPAQNPCFPAYHFLLSLSSVSRATMAHGGYGKRRVNPAARRSKALAVEKKPKSVSLKNQIRSAERMLRKNLPAEVREVQEKKLEGLRKQQEIHSRLAVERKIFLRDRKIKFFERRKIERRIRRLEKLQRAPSGQSQDSDIADQLSKLKEDLEYVRFFPKTEKYLALFTGSDDSDTVDRRNKLRKQIKANLIAAAASGKDLEETGSEDDGLLDMSEDDFFVSGSSSDEADADDEWTDKSAREHASSTSGKAASGMSSDERNHQRQQISARALMPPPRPTKSFPSSAQARSKPGSSLRKFSTNRRAEVSSSSNTSSSRSGSSFKVRGSSNSQTGHSSNISSNSDAHKPRRKRRPKKKKQQA 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8840900 8847421 - CmaCh06G013470.1 Cma06g01347 296901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01347 593 PANTHER ION CHANNEL POLLUX-RELATED 1 235 IPR044849 GO:0006811
Cma06g01347 593 MobiDBLite consensus disorder prediction 431 593 - -
Cma06g01347 593 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 1 235 - -
Cma06g01347 593 Pfam rRNA-processing protein Efg1 290 401 IPR019310 GO:0006364
Cma06g01347 593 MobiDBLite consensus disorder prediction 578 593 - -
Cma06g01347 593 MobiDBLite consensus disorder prediction 515 575 - -
Cma06g01347 593 MobiDBLite consensus disorder prediction 478 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01347 - - - cmax:111473089 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01862 Cma-Chr4:9470729 Cma06g01347 Cma-Chr6:8840900 3.36E-13 dispersed
Cma14g01772 Cma-Chr14:12847763 Cma06g01347 Cma-Chr6:8840900 2.80E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g600 . . . . . Bpe14g01223 . . . . Cma06g01347 . Car06g01168 . . Cpe08g00304 . . . . . . . . . . . . . . . . . Cone7ag0292 . . . . Cme06g00551 Blo02g00602 Blo07g00241 Bda11g00608 Bda13g00093 . Bpe13g00579 Bma02g00813 Bma06g01580 . Cmo06g01359 . . . . . . . . . . . . . . Cla05g00492 Cam05g0538 Cec05g0549 Cco05g0549 Clacu05g0535 Cmu05g0507 Cre05g0576 . Csa03g01268 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012235 2 0 2 2 2 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 3 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01347 Cma_Chr06 FPKM 25.626268 27.195412 31.885199 30.918396 22.458302 20.487354 23.59305 100.49868 102.88327 102.103584