Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01349 ATGGAACCCCAAATCCGCCATGGCTGCTCTCTTCTGCTCTTCATCTTCTTCATCTTCCCCTTCCCTCCCTCCTCCGCCCAATCCCCCGACGCCGATGGCTACTCCTGCACCGCCAACCAGACCACCGCCCCATGCCAGGCCTACGTCTTCTACCGAGCCACCGCCCCCGATTTTCTCGACTTAGCCACTATCGCTGACCTCTTCTGGGTCAGCCGCCACGAGATTTCTCGACCCAGTAACATCTCCGACTCCAACGCCACCTTCCCCCTCGTCTCCGGCCAGCCCCTCTTCATCCCCATCACCTGCTCCTGCAACTCCGTCAACGCCTCTGTCAGCATCTCGTACGCCAATCTCTCCTACAAAATCAACTCCGGCGACAGCTTCTGGCTCGTCTCCACCTCCAAGTTCCAGAATCTCACCACGTTTCAATCCGTCGAAGTCGTTAACCCCACTTTAGTCCCCACCAATCTCTCCATCGGCGTCGACGTCGTTTTCCCCATTTTCTGCAAGTGCCCTAACTCCACCCAATTCAAAAACCGCGTCAATTTCATGGTCTCTTACGTAATCCACCCACAGGACACTCTGTTTTCCATTGCTTCAAGGTTCGGAGTACCAACATCGGAAATCACCGCCGCGAACCGCCCCAATCCGAAGGCGTTCGACACAATCTTCATCCCGGTAAGTCGTCTCCCGAATTTGACGCAACCCATTGTTCTTCCACCGCCGCCAGAGCAGCCGCCGGCTCCGGCAATAGAGGGAAAAAACAGGGCAGTAACAGGGCTGGCGATTGGGATGGGGATTGCGGGGTTTTTACTGATTTTGATGGTGGGTTTGTGGGTATGTGGAGTGGGGAAGCGGCGGAGAAGTGAGAGGGAAATGAAGGAGGGAATTGAGAGGCAGAAATTGCAGGAAGTTGGGATTTGGAAGGGAAAGGGGAAAGAAATGGAGATGGATTTAATGGCGGACGTGTCGGATTGTTTGGATAAATACAGAGTGTTTAAGATCGAGGAGCTGAATGAAGCAACAAATGGGTTTCATGAGAGGAGCTTGATTCAGGGATCGGTTTACAAAGGGAGTATCAATGGAGTTGAGTTTGCTATCAAGAAGATGAAGTGGAACGCCTATGAACAGCTCAAGATCTTGCAGAAGGTGAACCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGCGTAGACCCTGATGATACAACCTGCTACTTAATTTATGAATATGTAGAGAACGGTTCTCTACATTCATGGCTACATGGAAGCCAAAAGCGAAAGTTGAATTGGAGAAGGAGATTGAGGATTGCGATTGATGTTGCTAATGGACTACTCTATGTTCACGAGCACACGAGGCCACGAGTTGTCCACAAAGACATCAAAAGTAGCAACATTTTGTTGGATGCAAGCATGAGGGCTAAGATAGCCAACTTTGGACTTGCGAAGTCAGGATGCAATGCTATAACCATGCACATTGTTGGAACTCAAGGCTATATAGCACCTGAATACATAGCGGATGGAGTCGTGTCGACAAAGATGGACATCTTTGCGTTTGGAGTTGTTTTGCTTGAGCTCGTCTCTGGTAAGGAGGCCATTGACGAGGAAGGAAGGGTTCTATGGATGCGAGCGAGTGGGTTTTCGGAAGGGAAAGAGAAGGAGAAGTTAGACCGGTTGAAGAATTGGATTGATGAAGCTCTTTTCGAGCAATCGTGCCCGATGGAGAGCGTGATGGATGTAATGAATGTGGCTGTTAGTTGCTTGCAAAAGGACCCGACGAAGAGGCCGAGCATGGTGGAGGTGGTTTATGCACTGAGCAAGAGCGACGACGCCGTGTTCGACTTCTCTGATGATACTCTATCAGCACCTATCTTAACAGCTAGGTAG 1884 50.37 MEPQIRHGCSLLLFIFFIFPFPPSSAQSPDADGYSCTANQTTAPCQAYVFYRATAPDFLDLATIADLFWVSRHEISRPSNISDSNATFPLVSGQPLFIPITCSCNSVNASVSISYANLSYKINSGDSFWLVSTSKFQNLTTFQSVEVVNPTLVPTNLSIGVDVVFPIFCKCPNSTQFKNRVNFMVSYVIHPQDTLFSIASRFGVPTSEITAANRPNPKAFDTIFIPVSRLPNLTQPIVLPPPPEQPPAPAIEGKNRAVTGLAIGMGIAGFLLILMVGLWVCGVGKRRRSEREMKEGIERQKLQEVGIWKGKGKEMEMDLMADVSDCLDKYRVFKIEELNEATNGFHERSLIQGSVYKGSINGVEFAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCVDPDDTTCYLIYEYVENGSLHSWLHGSQKRKLNWRRRLRIAIDVANGLLYVHEHTRPRVVHKDIKSSNILLDASMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFAFGVVLLELVSGKEAIDEEGRVLWMRASGFSEGKEKEKLDRLKNWIDEALFEQSCPMESVMDVMNVAVSCLQKDPTKRPSMVEVVYALSKSDDAVFDFSDDTLSAPILTAR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8854599 8857303 - CmaCh06G013490.1 Cma06g01349 296903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01349 627 ProSiteProfiles Protein kinase domain profile. 303 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01349 627 SUPERFAMILY Protein kinase-like (PK-like) 329 604 IPR011009 -
Cma06g01349 627 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Cma06g01349 627 PANTHER - 9 622 - -
Cma06g01349 627 SMART LysM_2 186 226 IPR018392 -
Cma06g01349 627 SMART LysM_2 119 166 IPR018392 -
Cma06g01349 627 Gene3D Phosphorylase Kinase; domain 1 315 410 - -
Cma06g01349 627 Pfam Protein kinase domain 355 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01349 627 ProSiteProfiles LysM domain profile. 185 231 IPR018392 -
Cma06g01349 627 Pfam LysM domain 187 216 IPR018392 -
Cma06g01349 627 SMART serkin_6 345 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01349 627 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 622 - -
Cma06g01349 627 CDD LysM 185 214 IPR018392 -
Cma06g01349 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Cma06g01349 627 Gene3D LysM domain 184 226 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01349 - - - cmo:103483654 1015.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01349 Cma14g01771 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02964 Cma-Chr4:19475401 Cma06g01349 Cma-Chr6:8854599 8.22E-75 dispersed
Cma06g01349 Cma-Chr6:8854599 Cma07g00750 Cma-Chr7:3333507 1.91E-103 dispersed
Cma14g01771 Cma-Chr14:12845873 Cma06g01349 Cma-Chr6:8854599 0 transposed
Cma14g01770 Cma-Chr14:12844747 Cma06g01349 Cma-Chr6:8854599 4.34E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68659 PF00069 Pkinase 4.20E-39 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01349 Cma_Chr06 FPKM 18.162439 22.045961 9.227046 8.390997 7.269948 6.477683 6.501028 23.076639 26.161446 24.211044